Transcript Information: S_Transcript_177893.p1


Annotated TAIR IDAT5G37770.1
Annotated Gene NameEF hand calcium-binding protein family
Annotated Gene Symbol(s)TCH2, CML24
Annotation TypeOrtholog
Chromosome Positionchr5:14999075-14999560 | Reverse length=161
E-Value1.2E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 130.748805481188
Replicate 228.771070166219
Replicate 322.056515451333
Condition 2: 8 Hour
Replicate 119.74039509086
Replicate 217.837014455998
Replicate 321.17182160765
Condition 3: 24 Hour
Replicate 118.450070515704
Replicate 227.41096129842
Replicate 321.472821588139


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_177893.p1 GENE.S_Transcript_177893~~S_Transcript_177893.p1 ORF type:complete len:148 (+),score=27.01,EF-hand_1|PF00036.28|2.3e-08,EF-hand_1|PF00036.28|1.1e-06,EF-hand_1|PF00036.28|7.9e-08,EF-hand_1|PF00036.28|6e-08,EF-hand_6|PF13405.2|4.2e-07,EF-hand_6|PF13405.2|0.0044,EF-hand_6|PF13405.2|2.6e-08,EF-hand_6|PF13405.2|0.011,EF-hand_7|PF13499.2|1.4e-14,EF-hand_7|PF13499.2|1.9e-11,EF-hand_5|PF13202.2|8.5e-08,EF-hand_5|PF13202.2|0.00021,EF-hand_5|PF13202.2|0.00049,EF-hand_5|PF13202.2|4.6e-05,EF-hand_8|PF13833.2|1.9e-05,EF-hand_8|PF13833.2|2.2e-06,EF-hand_8|PF13833.2|0.024,EF-hand_8|PF13833.2|5.8e-08,SPARC_Ca_bdg|PF10591.5|0.0013,SPARC_Ca_bdg|PF10591.5|0.0044,EF-hand_9|PF14658.2|0.0063,EF-hand_9|PF14658.2|0.074 S_Transcript_177893:254-697(+)
ATGGCGAAGAAGAATTCGAAAACAGACTCAGAAGTGGAGAGAATATTCGAGAAGTTCGACGCCAATGGCGACGGAAAGATATCGGAAACGGAGCTCCGTTCACTTTTGCAAGCCTTGGGATCGGAGACTTCCAAGGAGGAGGTTAAACGGATGATGGATGAGATGGACAAAGACGGTGACGGATTCGTCGATCTGGCGGAGTTTTCAGAGTTCCACGCTGGATCTGGCGGCAATGTAGGGTCCACCAACGAACTCCAAGAGGCCTTCAATCTCTACGATAAAGACGGTAATGGCTTGATCTCGGCGCGTGAACTTCACGCCGTTTTGAAGTCGCTCGGTGAGAAGTGTTCTCTCAAGGATTGTTCTAGAATGATCCAGTCTGTTGATGCTGATGGTGATGGTCATGTTAATTTCGAAGAGTTCAAGAAGATGATGGCCGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_177893.p1 GENE.S_Transcript_177893~~S_Transcript_177893.p1 ORF type:complete len:148 (+),score=27.01,EF-hand_1|PF00036.28|2.3e-08,EF-hand_1|PF00036.28|1.1e-06,EF-hand_1|PF00036.28|7.9e-08,EF-hand_1|PF00036.28|6e-08,EF-hand_6|PF13405.2|4.2e-07,EF-hand_6|PF13405.2|0.0044,EF-hand_6|PF13405.2|2.6e-08,EF-hand_6|PF13405.2|0.011,EF-hand_7|PF13499.2|1.4e-14,EF-hand_7|PF13499.2|1.9e-11,EF-hand_5|PF13202.2|8.5e-08,EF-hand_5|PF13202.2|0.00021,EF-hand_5|PF13202.2|0.00049,EF-hand_5|PF13202.2|4.6e-05,EF-hand_8|PF13833.2|1.9e-05,EF-hand_8|PF13833.2|2.2e-06,EF-hand_8|PF13833.2|0.024,EF-hand_8|PF13833.2|5.8e-08,SPARC_Ca_bdg|PF10591.5|0.0013,SPARC_Ca_bdg|PF10591.5|0.0044,EF-hand_9|PF14658.2|0.0063,EF-hand_9|PF14658.2|0.074 S_Transcript_177893:254-697(+)
MAKKNSKTDSEVERIFEKFDANGDGKISETELRSLLQALGSETSKEEVKRMMDEMDKDGDGFVDLAEFSEFHAGSGGNVGSTNELQEAFNLYDKDGNGLISARELHAVLKSLGEKCSLKDCSRMIQSVDADGDGHVNFEEFKKMMAA*

Click here to download the sequence:
Link to NCBI Protein BLAST