Transcript Information: S_Transcript_178539.p1


Annotated TAIR IDATMG00750.1
Annotated Gene NameGAG/POL/ENV polyprotein
Annotated Gene Symbol(s)ORF119
Annotation TypeOrtholog
Chromosome PositionchrM:220830-221189 | Forward length=119
E-Value4.3E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5491368099556
Replicate 21.8900577545153
Replicate 32.3699067784528
Condition 2: 8 Hour
Replicate 12.36558420871
Replicate 23.5750730116202
Replicate 32.5869315325101
Condition 3: 24 Hour
Replicate 12.8670659825656
Replicate 22.9994390938494
Replicate 33.1995015143228


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_178539.p1 GENE.S_Transcript_178539~~S_Transcript_178539.p1 ORF type:complete len:1821 (-),score=207.02,RVT_1|PF00078.23|3.8e+03,RVT_1|PF00078.23|2e-24,rve|PF00665.22|4.7e-18,Retrotrans_gag|PF03732.13|1e-16,gag-asp_proteas|PF13975.2|1e+04,gag-asp_proteas|PF13975.2|1.3e-08,Asp_protease_2|PF13650.2|1.7e-05 S_Transcript_178539:122-5584(-)
ATGATCACAAGAAGCCAAGGGCAACAAGATCTTATTCCCTTGAATCTTGAGATTGAAGCTGAAGCCCGGCGACTTAGCTCTAGCCAAAGGAGACGAAGAAGGAGACAGTTAGCGCAACAACAAGCTATGGCCGACCAACCTATGAGGAATTACGGCGTCCCTAGTCTTACTTCAACAGGGAACGCTATATCTCGGCAAACTACTGAGAATCACACCTTTGAATTGAAACCAGCTCTTATTAATCTTATCAAAGATGATCGATTCTCCGGCCTGCCTCATGAAATGCCTTTGGATCATCTAAACACTTTCGTTGAAAAATGTGATACCATCAAAATAAATGGAATCACTGATGATATGATCCGGTTAAAGTTATTCCCTTTCTCTCTCATGGGGAATGCGAGGACTTGGTTGCAAAACAAGCCCCCGAACACCTATGCTGATTGGGAATCGCTGGCCAAGGCATTCCTTGAGAAGTTTTACCCTCCCACGAAGACCGAGAGGTATCGTGAGGAAATTCTGCAATTCCGCCAACAACCGACCGAGACCTTGAGTGAGGCTTGGGAAAGATTTAAGGAGCTCCTACGAAAATGCCCCCATCATGGACTACCAGATTTCCTTATCCTTTCCAGCTTCACCAAACATCTTAGCGCGGATGACAAGAGGGCACTGGACTCGGCATCAAACGGATCATTTATGGGGAAAACTTATGCTCAAGGCAAAGCACTCATAGAAGAGCTAGCAACAAGCTCATTTTCTTGGAGCGAGAGGAACACTCCCCCTCCTAAGGGAGGAGGTAACATTGATTTAGATTCTATTCAAATACTTGCTGAAAAGTTAGATTCTTTAACTTTGAAAGTCGAAAGACTACAATCTATTTCAACCCCCTCACAAGAAAGTGTGAAAATGTTGCGTAATGTACAATCATATGGACATGCCAATCCCTCTTCCCCATTTGATCCCAATATTTCTCAAGTTAATGCTGTACAAAATGCCCCCATGATGACCCCCTTGTGTGAAATATGTGGTATTTATGGTCATTTTCCTGCTGAATGTAATCTTGTTGTTAGTGAGAATGTGAATGCTGTTACTCAATACCAAGGTAGACCCCAAGGGAACCCCTACCCCAACTCTTTCAACACACAATACAGAGGGAATCCCCAAGGGTACAACTACCAATCACAACAACAACAATACCATCGACCCCCACCATACCCTCAACAACCCACATATTATCAACAACCTCCACCACAGCAAATACCCAGCCAACAAACTCCTCCCGGTTTCCAACAAACGAGACAAAATCTCCCATCTTCTTCAAACTCTCGAAGAGACAATTCTTTAGACCAAAAGCTCGAGAGTATATTGGAAACCCTTAAGCAAATGCAAACACATAGCAAAATGGTGGATAACCAAATTGCTCAACTTGCTCAACCCTCTAGACCTCAAGCACTCCCAGCTCAACCTACTCAACCCAATAACGAACATGTGAATGCGGTAACGCTTAGGAGTGGAAAGGCCCTTGAAGATCCTAAGTCTAAACCTAGACCCTCTAGTGCTTTACCCAATTCACCTAATGAGGAGCCTAGCGTGATTGAGGAAGATTCTAATGTTGAGGGGAACCTTAAGGAGAGTCATAACCTTTCTAGTCCCCCTAGAGAACTAGCACCCTCTTTGCCTTTCCCTCATAGACAGGTTGACACCAAGGTTGACAAGCAATTTAGTCGATTTGTGGAAATTCTAAAAAAGTTGCAGTTAAATGTGCCTTTCACTGATATGTTCACCCAAATGCCCACCTATGCTAAATTTTTGAAAGACATTCTCACTAGAAAACGTAGTTTAGAGGCAGTTGAGACAGTAGCCTTCGCTGAACAATGTAGCAACATCCTCTTAAACAAGGCCCCTCCTAAGTTGAAAGACCCAGGCACTTTTGCTATCCCATGTGTTTTGGGTGATTTTAGAGTTGAGAATGCTTTGTGTGATTTGGGTGCTAGTGTTAGTGTTATGCCACTTTCAATTTGTAAGAAGCTTGACCTTGGAGAGATTAAGGTCACCTCCATGACCCTCCAAATGGCGGATCGCTCCGTCAAACACCCTATAGGAGTCTTGGAGGACGTACCCGTCCGTGTAGGGAAATTCTACTTTCCCGTAGACTTTGTGGTCTTAGAGATGGATGGGGATTCTCAAATCCCCATAATTCTTGGACGACCTTTCTTGGCTACAGCTGGGGCCTTGATTGATGTGAGAAATGGTAAAATCTCCTTGCAAGTGGGTGATGAAAAGCTTGAATTCTTACTACCTAATGCTATGCAACACCCCTCTTCCCTTGATTGTTGTTATAGGATTGATGTGCTTGATGAAGTATTACAGGAATTTGAACCCTTGCATATATGTGGCGAGCCGTTGAACCCCTTCTTCAACAATGAAACAATCAAGGAGAGTGATGAATATATTTGTCATGTAGCACAGGTAATGGATTCTGCACCCATTGAGAAGGATGACTCACCAATGGAACAACCTGTGGAAGACCCTATTCCACAAAGACAAGGTAACACTTCCTCTCTTGAACTTAAGCCCCTTCCCCCTTCTCTCAAGTATGCGTATTTGGATTCCGAGCATAAATTCCCAGTTATCGTTAACGCTAAACTCAATAGCCCCGAGCTTTCTAAGTTGTTGTCGGTTCTCCGAAAACACAACAAAGTTATTGGGTATAGCATCGACGATCTCACGGGAATAAGCCCCTCTTTATGTATGCATCGTATCTCTTTGGAAGACTGTTCTAAGTCTTCCATTGAGCATCAAAGGCGGCTCAATCCTAATATGCAAGAAGTGGTCCGTAAAGAAATTTTGAAACTACTTGAAGCTGGAATCATCTATCCTATCTCGGATAGTAAATGGGTGAGTCCCGTTCAAGTAGTTCCTAAAAAGGGAGGAATGACGGTGATTCAAGGGGATAACAACACATTGATCCCAACTCGTCTTGTTACGGGGTGGAGGATGTGTATTGATTATCGCAAGTTGAATTCCGTCACCCGCAAGGACCACTATCCTCTTCCATTCATTGATCAAATGCTTGAACGACTGGCTAAGCACTCTCATTTTTGCTATCTTGATGGTTACTCGGGATTTTTCCAAATCCCAATACATCCCGAGGACCAAGAGAAGACGACATTTACTTGCCCTTATGGCACCTTCGCTTATCGAAGGATGCCATTCGGGTTATGCAATGCACCCGCGACATTTCAACGGTGTATGATGTCTATCTTTTCTGATTTTGTTGAGAAAATCATGGAAGTCTTCATGGACGACTTTAGCGTCTATGGGACTAATTTTGATGAATGTTTAGCCAATCTTTCACGAGTCCTTGAACGATGTGAGGAGGTAAACTTGGTTTTGAATTGGGAGAAGTGTCATTTTATGGTTCAAGAGGGAGTCGTGTTGGGTCATATTGTGTCTAGTCGGGGTATCGAAGTCGATAGAGCTAAGGTTGAGGTGATCGAAAAACTTCCACCTCCCACTAATGTCAAAGGGGTGAGAAGTTTCCTTGGTCACGCCGGTTTTTACCGACGTTTTATCAAGGACTTTTCAAAGATCGCAAAGCCTCTAACCCAGCTCCTCGTCAAAGATACTCCTTTCATCTTTTCTAATGATTGTCTTGAAGCTTTTTCCAGTTTAAAGAAGGCCCTTGTGTCTGCGCCGATTGTACAACCGCCCGATTGGAATCTACCTTTTGAGATTATGTGTGATGCCAGCGATTTTGCAATTGGGTCGGTGTTAGGGCAACGTAAAGATAAAAAGCTTCACGCCATTTATTATGCCAGCAAAACTTTGGATGGGACACAGGTTAACTACACCACAACCGAGAAGGAACTTCTAGCAGTTGTTTATTCATTGGATAAATTTCGGCCTTATCTTATTGGGTCGAAGGTTATTGTTCATACAGACCATGCTGCTCTCAAGTATCTACTGTCCAAAAAGGAATCCAAACCTCGGTTAATCCGTTGGATACTTGCTCTTCAAGAATTCAACCTTGAAATCAAAGACAAGTGTGGAGCCGAAAATGTGGTTGCAGATCATCTATCAAGACTTCCTTTCCCCGGTTCTTCTAACGACAGTCCCATCAATGATTCAATACCGGGAGAACATCTTCTTTCCATTCACTCTAATCAAATTCCATGGTATGCGGATATCGCCAATTATCTTGCTTGTGGCGCCCAACCTATTGGCTATTCCTACCAACAACGCAAGAAATTTTTCCATGATGTTCGTCACTACTTATGGGATGACCCTCTACTCTTCAAGCGGTGTAGTGATGGGATTATTAGAAGATGTGTGCCCGAATTTGAGGTCCCGAGTATCCTATCACATTGCCACGAGCAACCTTGCGGAGGTCATATGGGCACCTCAAAAACATGTGCTAAGATCCTCCAATGTGGATTTTATTGGCCAACTCTATTTCGGGACGCTAATACCTTCGTCAAGAGTTGCGATCGTTGTCAACGAGTTGGCAATATCACTAAACGGCATGAGATGCCCCTTACTAACATACTTGAGGTTGAAATCTTTGATGTTTGGGGCATCGACTTCATGGGACCCTTTCCCTCATCTTTTGGAAACAAATTTATTTTGGTAGCCATTGATTACGTGTCTAAGTGGGCGGAGGCCATGGCATCTCCGACCAACGACTCACGGGTAGTGGCTAAACTTTTCAAGAAGATTATATTTCCAAGATTCGGGGTTCCACGAGTCGTTATTAGTGATGGTGGGTCTCACTTTCGAGAAAAGAGTCTTGAAAAACTGTTAGCAAAATATGAGGTGAATCACCGAATTGGCCTTGCTTATCATCCCCAAACGAGTGGCCAAGTTGAAGTTACAAATAGAGAATTGAAACACATTCTTGAGAAAACGGTGCAAACAAGAAAAGATTGGTCTCTATGTTTGGATGATGCCCTATGGGCTTATCGGACGGCATTTAAAACACCTATAGGAACCACACCATACCGGCTCCTATATGGTAAATCATGTCATTTGCCGGTCGAGTTGGAGCACAAGGCTTATTGGGCGATAAAGGCCCTGAACCTTAACCTAAAAGATGCGGGAGCCAAAAGGCTTTTGGACCTTAACGAGCTTGATGAAATCAGATTTGACGCTTATGAAAATGCCAAACTCTACAAGGAGAAGACTAAGAAATGGCATGATCAAAGGATCACCTCCCGGGAGTTCAAGGAGGGTGACCAAGTCCTTCTCTATAACTCTAGACTCAAGCTCTTTCCCGGGAAGCTCAAATCCCGATGGTCCGGCCCCTTCCTTGTACACAAAGTTTACCCTCATGGAGCCATTGCTATTGGAAAGGAAGGTAGCGACGTCTTTAAGGTTAATGGCCATCGCCTCAAGCATTATCATGTTGGCACCCCATTGGGCCGAGTGACTACGGTGTCACTCCTTGACCCCCCTCCAATTGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_178539.p1 GENE.S_Transcript_178539~~S_Transcript_178539.p1 ORF type:complete len:1821 (-),score=207.02,RVT_1|PF00078.23|3.8e+03,RVT_1|PF00078.23|2e-24,rve|PF00665.22|4.7e-18,Retrotrans_gag|PF03732.13|1e-16,gag-asp_proteas|PF13975.2|1e+04,gag-asp_proteas|PF13975.2|1.3e-08,Asp_protease_2|PF13650.2|1.7e-05 S_Transcript_178539:122-5584(-)
MITRSQGQQDLIPLNLEIEAEARRLSSSQRRRRRRQLAQQQAMADQPMRNYGVPSLTSTGNAISRQTTENHTFELKPALINLIKDDRFSGLPHEMPLDHLNTFVEKCDTIKINGITDDMIRLKLFPFSLMGNARTWLQNKPPNTYADWESLAKAFLEKFYPPTKTERYREEILQFRQQPTETLSEAWERFKELLRKCPHHGLPDFLILSSFTKHLSADDKRALDSASNGSFMGKTYAQGKALIEELATSSFSWSERNTPPPKGGGNIDLDSIQILAEKLDSLTLKVERLQSISTPSQESVKMLRNVQSYGHANPSSPFDPNISQVNAVQNAPMMTPLCEICGIYGHFPAECNLVVSENVNAVTQYQGRPQGNPYPNSFNTQYRGNPQGYNYQSQQQQYHRPPPYPQQPTYYQQPPPQQIPSQQTPPGFQQTRQNLPSSSNSRRDNSLDQKLESILETLKQMQTHSKMVDNQIAQLAQPSRPQALPAQPTQPNNEHVNAVTLRSGKALEDPKSKPRPSSALPNSPNEEPSVIEEDSNVEGNLKESHNLSSPPRELAPSLPFPHRQVDTKVDKQFSRFVEILKKLQLNVPFTDMFTQMPTYAKFLKDILTRKRSLEAVETVAFAEQCSNILLNKAPPKLKDPGTFAIPCVLGDFRVENALCDLGASVSVMPLSICKKLDLGEIKVTSMTLQMADRSVKHPIGVLEDVPVRVGKFYFPVDFVVLEMDGDSQIPIILGRPFLATAGALIDVRNGKISLQVGDEKLEFLLPNAMQHPSSLDCCYRIDVLDEVLQEFEPLHICGEPLNPFFNNETIKESDEYICHVAQVMDSAPIEKDDSPMEQPVEDPIPQRQGNTSSLELKPLPPSLKYAYLDSEHKFPVIVNAKLNSPELSKLLSVLRKHNKVIGYSIDDLTGISPSLCMHRISLEDCSKSSIEHQRRLNPNMQEVVRKEILKLLEAGIIYPISDSKWVSPVQVVPKKGGMTVIQGDNNTLIPTRLVTGWRMCIDYRKLNSVTRKDHYPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPEDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVYGTNFDECLANLSRVLERCEEVNLVLNWEKCHFMVQEGVVLGHIVSSRGIEVDRAKVEVIEKLPPPTNVKGVRSFLGHAGFYRRFIKDFSKIAKPLTQLLVKDTPFIFSNDCLEAFSSLKKALVSAPIVQPPDWNLPFEIMCDASDFAIGSVLGQRKDKKLHAIYYASKTLDGTQVNYTTTEKELLAVVYSLDKFRPYLIGSKVIVHTDHAALKYLLSKKESKPRLIRWILALQEFNLEIKDKCGAENVVADHLSRLPFPGSSNDSPINDSIPGEHLLSIHSNQIPWYADIANYLACGAQPIGYSYQQRKKFFHDVRHYLWDDPLLFKRCSDGIIRRCVPEFEVPSILSHCHEQPCGGHMGTSKTCAKILQCGFYWPTLFRDANTFVKSCDRCQRVGNITKRHEMPLTNILEVEIFDVWGIDFMGPFPSSFGNKFILVAIDYVSKWAEAMASPTNDSRVVAKLFKKIIFPRFGVPRVVISDGGSHFREKSLEKLLAKYEVNHRIGLAYHPQTSGQVEVTNRELKHILEKTVQTRKDWSLCLDDALWAYRTAFKTPIGTTPYRLLYGKSCHLPVELEHKAYWAIKALNLNLKDAGAKRLLDLNELDEIRFDAYENAKLYKEKTKKWHDQRITSREFKEGDQVLLYNSRLKLFPGKLKSRWSGPFLVHKVYPHGAIAIGKEGSDVFKVNGHRLKHYHVGTPLGRVTTVSLLDPPPIV*

Click here to download the sequence:
Link to NCBI Protein BLAST