Transcript Information: S_Transcript_178948.p1


Annotated TAIR IDAT4G18840.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:10338719-10340356 | Reverse length=545
E-Value5.8E-212
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.78707582211255
Replicate 20.57094094973236
Replicate 30.3068107666403
Condition 2: 8 Hour
Replicate 12.680455714538
Replicate 23.3082216103108
Replicate 33.1126653619104
Condition 3: 24 Hour
Replicate 10.48454455062316
Replicate 20.79595641395675
Replicate 30.97904423753685


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_178948.p1 GENE.S_Transcript_178948~~S_Transcript_178948.p1 ORF type:complete len:541 (+),score=122.47,PPR|PF01535.16|0.0083,PPR|PF01535.16|0.0053,PPR|PF01535.16|3.9e-07,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|2.6e-06,PPR|PF01535.16|1,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.018,PPR|PF01535.16|0.11,PPR|PF01535.16|4.7e+02,PPR|PF01535.16|3.4,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|8.9e-09,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|9.4e-12,PPR_2|PF13041.2|2.5e+02,PPR_2|PF13041.2|5.5e-11,PPR_2|PF13041.2|0.0039,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|3.3e+02,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.093,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|2.5e-05,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|70,PPR_3|PF13812.2|0.86,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|4,PPR_1|PF12854.3|17,PPR_1|PF12854.3|6.8e+03,PPR_1|PF12854.3|7.2,PPR_1|PF12854.3|0.014,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.0024,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|0.42,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|0.58 S_Transcript_178948:186-1808(+)
ATGGAAATATCCACAAGCCATGTCCCGGCAATATTGTCCTTCACAGACAAGGCAAACGCAATCTCAGAGCTCCAACAAGCTCATGCCCATATGCTCAAAACTGGTCTAATCAATGACACTTACGCAGCTAGTCGCTTAGTTGCATTTGCTGCCACCAATCCTGAACCTCAAACCATATCCTATGCTCACTCTATTTTCTCTGTCATCAACAACCCCAACTCATTTATTTGGAATTCCCTCATCAGGGCACATGCCAATAGCTCAAACCCACAAAATTCCCTTCTTCTTTTCAGCCAAATGTTGGGTAGTGGAACTGTATTTCCTGATAAGTACACTTATCCTTTTGTCCTTAAGGCATGTTCTGGTCTTGGTGGGGTCAAAGAGGGTAAACAAGTTCATGGGCATGTTGTGAAATGTAAGGAGATTAGGGATGATGTTTATGTGCAGAATACTTTGATGAGTATGTATGCTAATTTTGGATGTTTTGAACTTGCACGTAAGGTGCTCGATAGAATGCCCCAAAGAGATGTTATTTCCTGGAATGCTATGTTGAGTGCTTATGTGGAGAAGGGTATGATGGAGGAATCATGGGTTTTGTTTAATGAGATGGGGGAAAGGAATGTGGAGTCTTGGAACTTCATGGTATCTGGGTTTGCTGGGTTGGGTTTGGTTGAGGATGCTAGAAGGGTTTTTGATGAGATGCCTGTGAAAGATGTTGTCTCTTGGAATGCCATTATTTCAGGGTATGCTCATGTGGGTAGTTTCAATGAAGTTTTGGTTCTTTTCGAGGACATGCTAAGTGAGAATATTAAGCCTGATAAGTATACTTTGGTGAATGTTTTATCAGCTTCTGCTCATCTTGGAGCTTTGAGACAAGGGGAATGGATTCATGCATACATAGATAGGAATGGGATTGGCATTAAAGGTTTTCTAGCCACTGCACTTGTGGACATGTATTCCAAATGTGGGAGCATTGGAAATGCTTTGGAAGTGTTTAGTAACACCTTAGAGAAAGATGTTAGTACTTGGAACTCGATGATTGGAGGTTTAAGCATCAACAGTTATGGTGAGCAGGCAGTTGGGGTGTTTCATGAGATGATACAGGATGGTTGTCGACCGAATGAGGTGACCTTTATAAATGTTCTATCTGCTTGCAGCCATGCGGGTTTGTTAAATGACGGTCTTGATATATTTGATCGTATGATTCATAGTTATGGGATTCAGCCTACAATCAAAAACTATGGATGCATGGTCGATCTGCTTGGTCGAGCTGGATTACTAGAAGAGGCAAAGGACTTTCTAAATTTGGTTCCAGATAACAATTCACTGGTATTGTGGCAGTCTCTTCTGGCTTCCTGTAGAAACCATGACAATGTCGAGCTAGCACGAGAAGTTGCTGCAAAGCTATTAGAACTGGACCCTAATGACAATGCTGGTTATGTTCAGCTGTCAAATGTGTATGCATCCACAGGAAAATGGAAAAATGTTGCCGAAGTGAGGAAAAAGATGAAGGCACAAGGTGTAAAAAAGGAGCCTGGTTGTAGCATGATCGAAATCGATGGAGTTGTCCATGAGTTTTTAGCAGGTGAAGGTTTGTTTCCTGATTTAGTTGGTTCTGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_178948.p1 GENE.S_Transcript_178948~~S_Transcript_178948.p1 ORF type:complete len:541 (+),score=122.47,PPR|PF01535.16|0.0083,PPR|PF01535.16|0.0053,PPR|PF01535.16|3.9e-07,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|2.6e-06,PPR|PF01535.16|1,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.018,PPR|PF01535.16|0.11,PPR|PF01535.16|4.7e+02,PPR|PF01535.16|3.4,PPR_2|PF13041.2|5.8e-06,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|8.9e-09,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|9.4e-12,PPR_2|PF13041.2|2.5e+02,PPR_2|PF13041.2|5.5e-11,PPR_2|PF13041.2|0.0039,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|3.3e+02,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.093,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|2.5e-05,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|70,PPR_3|PF13812.2|0.86,PPR_3|PF13812.2|0.48,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|4,PPR_1|PF12854.3|17,PPR_1|PF12854.3|6.8e+03,PPR_1|PF12854.3|7.2,PPR_1|PF12854.3|0.014,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.0024,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|0.42,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|0.58 S_Transcript_178948:186-1808(+)
MEISTSHVPAILSFTDKANAISELQQAHAHMLKTGLINDTYAASRLVAFAATNPEPQTISYAHSIFSVINNPNSFIWNSLIRAHANSSNPQNSLLLFSQMLGSGTVFPDKYTYPFVLKACSGLGGVKEGKQVHGHVVKCKEIRDDVYVQNTLMSMYANFGCFELARKVLDRMPQRDVISWNAMLSAYVEKGMMEESWVLFNEMGERNVESWNFMVSGFAGLGLVEDARRVFDEMPVKDVVSWNAIISGYAHVGSFNEVLVLFEDMLSENIKPDKYTLVNVLSASAHLGALRQGEWIHAYIDRNGIGIKGFLATALVDMYSKCGSIGNALEVFSNTLEKDVSTWNSMIGGLSINSYGEQAVGVFHEMIQDGCRPNEVTFINVLSACSHAGLLNDGLDIFDRMIHSYGIQPTIKNYGCMVDLLGRAGLLEEAKDFLNLVPDNNSLVLWQSLLASCRNHDNVELAREVAAKLLELDPNDNAGYVQLSNVYASTGKWKNVAEVRKKMKAQGVKKEPGCSMIEIDGVVHEFLAGEGLFPDLVGSE*

Click here to download the sequence:
Link to NCBI Protein BLAST