Transcript Information: S_Transcript_17908.p1


Annotated TAIR IDAT3G54980.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20370293-20372848 | Forward length=851
E-Value1.4E-184
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.7385483896771
Replicate 26.8592647021761
Replicate 37.2115826993566
Condition 2: 8 Hour
Replicate 17.7236189289616
Replicate 26.7402364491484
Replicate 37.2419225837437
Condition 3: 24 Hour
Replicate 18.1218156567594
Replicate 26.6102783764346
Replicate 36.5480307590205


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_17908.p1 GENE.S_Transcript_17908~~S_Transcript_17908.p1 ORF type:complete len:624 (+),score=119.93,PPR_2|PF13041.2|3.7e-07,PPR_2|PF13041.2|0.00062,PPR_2|PF13041.2|4.1e-08,PPR_2|PF13041.2|7e-10,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|5.2e-13,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|1e-16,PPR_2|PF13041.2|0.00072,PPR_2|PF13041.2|1e-15,PPR_2|PF13041.2|4.6e-16,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|2e-13,PPR_2|PF13041.2|1.4e-15,PPR_2|PF13041.2|3.4e-09,PPR_2|PF13041.2|2.8e-14,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|2.7,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|6.2e-11,PPR_1|PF12854.3|0.0068,PPR_1|PF12854.3|0.0009,PPR_1|PF12854.3|4e-12,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|7.1e-05,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|4.4e-12,PPR_1|PF12854.3|1e-07,PPR_1|PF12854.3|2.3e+02,PPR|PF01535.16|0.0066,PPR|PF01535.16|0.3,PPR|PF01535.16|0.0037,PPR|PF01535.16|5.1e-08,PPR|PF01535.16|0.0061,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|7.1e-08,PPR|PF01535.16|0.058,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|2.3e-07,PPR|PF01535.16|1.9e-08,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|26,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|1.1e-05,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|3.4e-05,PPR_3|PF13812.2|0.0031,MRP-S27|PF10037.5|2.6,MRP-S27|PF10037.5|2.9,MRP-S27|PF10037.5|0.02,MRP-S27|PF10037.5|85,MRP-S27|PF10037.5|0.021,MRP-S27|PF10037.5|58,TPR_11|PF13414.2|1.1e+03,TPR_11|PF13414.2|1.1e+03,TPR_11|PF13414.2|0.099,TPR_11|PF13414.2|82,TPR_11|PF13414.2|1.4e+03,TPR_11|PF13414.2|0.74,TPR_11|PF13414.2|1.3e+02,TPR_11|PF13414.2|51 S_Transcript_17908:402-2273(+)
ATGTCCATGGCTTGCTCGTCAATTCGAGTATGCCGGCGTTTCTGTACGTTTCGGGCCGTTTCATGTATCCGAGAGCGAAACGCAACTGGGTTAGCTGGGGAAATAGATGCAGTTTCATATAGTTATGCAATTGAAGGTTCTAGTAGGAAGGGCGATTCGAAAACAGCTTGTGAGCTTTTAATGGAGATGAGGGAGAAGGGTTTGGCGCCCTCTGAGAGTGCCTTCACTAGTGCCATTGTGGCATGTGCGAAGAAGAAGGATATGGCCCAAGCTTTGAGATTAAAGGATGAAATGATTTTGTGTGGAAGATCCATGAATTCGGTGGTCGCAAAAAGTTTGATGAAGGGGTTTTGTGTATTAGGTGATATGGAGAGTGCTCTAGGTTTGTTTGAGAGGATCATTGCGGATGACAATAATGGATTATCTCTGAATAAGGCTACTTTCTCAGTGTTGATTGAAGGTTGTTGTAGAATGGGAAATATGGAAAAAGCATGTGAGCTTTATGACCATATGGTGAGGATGGGTATTGAACCTAGTATCTATAATGTTAATTCATTGATTAAAGGGTTTCTGAAAGCGGGATTGTGGGAAAACGCGTATGAGCAGTTTAACAAGGCTGTTGAAGCTGGTGTTGTCAATGTTTTTTCGTATAATTTTCTCATCTCATGGCTGTGTAGGGCTAACAAGGTGGTTGAAGCACGGAAGTTTTGGGATCAAATGGTTGAATCTGGGATTACCCCGAATATAGTCTCTTATAACCACCTTGTCCTTGGATATTGTAGGGTAGGGGATATTGTGATGGCGGATAGTATGTATTCTGACATGATTTGTAAGGGTTTTAAACCTAATGTTGTCAGCTTTACGATTCTGATGGATGGATACTTCAAGAAAGGTGAGGTAGAGAAGGCCCTTCATTTGTTTGATGATATGACGAGGCAAGGTATTGCTTGTACAGATTACACATATAATACAATCATTTGTCGGTTGTGCAAACTCAGGCAAACATCTCAGGCTTGGAAAATGCTGGAGAACTTCATAAAGGAAGACAAATTCAGGCCATCTTGCATGACTTACAATTTCATTATTGAAGGGTTTATGAAAGAAAGCTCCATTGATTCTGCATTGTTTGTGTACACTGAAATGAGAGAAAAAGGGGTCTCCCCAAATGTTGTAACTTGCACAATTTTGATTGATGGGTTTTGCAAAAGCAATAATATTGATCTTGCTTTGAAAGTGAGAAATGAGATGATAAGCAACGAAGTTAAATTGGATGTTATAGCATACAATGTGCTTATTGATGGGTTTTGCAAACGAAGGGAAATGGAAAGTGCATCGAGGCTTTTCTCTGAACTCCTTGAAACAGGGTTGTCTCCAAACATATTTGTTTACAATAGCATGATCAAGGGTTACATGAATCTAAGCAACATGCAAGCTGCTCTTTCTTTTTATGATAAAATGATCCAACAAGGGATTTCTTGTGATGTGGAAACATACACTACTTTGATTGATGGACTATTGAAGGAAGGTGACTTGCTTGCTGCTTCAGATTTCTATTCTGAGATGCTAACAAAAGGACTGAGGCCTGATGAAATTACATATACAGCTTTGGTTAAGGGGTTATGTAAGAAAGGCCAATTGGAAAATGCATGGGAGTTCTTGACAGAGATGGAGGAAAAGGGATCGACTCCTAACTCTCTTATATATAATGCACTGATTGCTGGTTATTTCAAGGAAGGAAATTTGCCCAAGGCCTTCAGCTTGTATGATGAAATGGTTGAGAGAGGTCATGCACCTGATAAAATGACCTTTGACTTTCTTATGAACGGGAACTTCAAAACGAGCAAGGATACCTTAAAGACTGCAGTGGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_17908.p1 GENE.S_Transcript_17908~~S_Transcript_17908.p1 ORF type:complete len:624 (+),score=119.93,PPR_2|PF13041.2|3.7e-07,PPR_2|PF13041.2|0.00062,PPR_2|PF13041.2|4.1e-08,PPR_2|PF13041.2|7e-10,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|5.2e-13,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|1e-16,PPR_2|PF13041.2|0.00072,PPR_2|PF13041.2|1e-15,PPR_2|PF13041.2|4.6e-16,PPR_2|PF13041.2|1.5e-14,PPR_2|PF13041.2|2e-13,PPR_2|PF13041.2|1.4e-15,PPR_2|PF13041.2|3.4e-09,PPR_2|PF13041.2|2.8e-14,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|2.7,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|6.2e-11,PPR_1|PF12854.3|0.0068,PPR_1|PF12854.3|0.0009,PPR_1|PF12854.3|4e-12,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|7.1e-05,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|4.4e-12,PPR_1|PF12854.3|1e-07,PPR_1|PF12854.3|2.3e+02,PPR|PF01535.16|0.0066,PPR|PF01535.16|0.3,PPR|PF01535.16|0.0037,PPR|PF01535.16|5.1e-08,PPR|PF01535.16|0.0061,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|7.1e-08,PPR|PF01535.16|0.058,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|2.3e-07,PPR|PF01535.16|1.9e-08,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|26,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|1.1e-05,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|0.00067,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|3.4e-05,PPR_3|PF13812.2|0.0031,MRP-S27|PF10037.5|2.6,MRP-S27|PF10037.5|2.9,MRP-S27|PF10037.5|0.02,MRP-S27|PF10037.5|85,MRP-S27|PF10037.5|0.021,MRP-S27|PF10037.5|58,TPR_11|PF13414.2|1.1e+03,TPR_11|PF13414.2|1.1e+03,TPR_11|PF13414.2|0.099,TPR_11|PF13414.2|82,TPR_11|PF13414.2|1.4e+03,TPR_11|PF13414.2|0.74,TPR_11|PF13414.2|1.3e+02,TPR_11|PF13414.2|51 S_Transcript_17908:402-2273(+)
MSMACSSIRVCRRFCTFRAVSCIRERNATGLAGEIDAVSYSYAIEGSSRKGDSKTACELLMEMREKGLAPSESAFTSAIVACAKKKDMAQALRLKDEMILCGRSMNSVVAKSLMKGFCVLGDMESALGLFERIIADDNNGLSLNKATFSVLIEGCCRMGNMEKACELYDHMVRMGIEPSIYNVNSLIKGFLKAGLWENAYEQFNKAVEAGVVNVFSYNFLISWLCRANKVVEARKFWDQMVESGITPNIVSYNHLVLGYCRVGDIVMADSMYSDMICKGFKPNVVSFTILMDGYFKKGEVEKALHLFDDMTRQGIACTDYTYNTIICRLCKLRQTSQAWKMLENFIKEDKFRPSCMTYNFIIEGFMKESSIDSALFVYTEMREKGVSPNVVTCTILIDGFCKSNNIDLALKVRNEMISNEVKLDVIAYNVLIDGFCKRREMESASRLFSELLETGLSPNIFVYNSMIKGYMNLSNMQAALSFYDKMIQQGISCDVETYTTLIDGLLKEGDLLAASDFYSEMLTKGLRPDEITYTALVKGLCKKGQLENAWEFLTEMEEKGSTPNSLIYNALIAGYFKEGNLPKAFSLYDEMVERGHAPDKMTFDFLMNGNFKTSKDTLKTAVA*

Click here to download the sequence:
Link to NCBI Protein BLAST