Transcript Information: S_Transcript_179120.p1


Annotated TAIR IDAT1G80550.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:30285358-30286704 | Reverse length=448
E-Value8.6E-193
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0027943871553
Replicate 24.8323366508716
Replicate 33.4682136440399
Condition 2: 8 Hour
Replicate 16.5108492561158
Replicate 25.9889240827587
Replicate 34.9988492170974
Condition 3: 24 Hour
Replicate 15.1712445431274
Replicate 25.0642587814405
Replicate 34.1292727565898


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_179120.p1 GENE.S_Transcript_179120~~S_Transcript_179120.p1 ORF type:complete len:452 (+),score=66.76,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|0.00038,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|2.2e-09,PPR_2|PF13041.2|2.9e-19,PPR_2|PF13041.2|0.0087,PPR_2|PF13041.2|0.00016,PPR_2|PF13041.2|3.6e-05,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.00061,PPR|PF01535.16|1.7,PPR|PF01535.16|4.4,PPR|PF01535.16|5e-05,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|0.018,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|17,PPR|PF01535.16|0.14,PPR|PF01535.16|0.0005,PPR_1|PF12854.3|6.9,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|79,PPR_1|PF12854.3|0.049,PPR_1|PF12854.3|0.0074,PPR_1|PF12854.3|1.5e-14,PPR_1|PF12854.3|0.77,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|0.00019,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|58,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|38,PPR_3|PF13812.2|1.2e-06,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|19,PPR_3|PF13812.2|0.0082 S_Transcript_179120:25-1380(+)
ATGAGGAAGGCGAAAATTCTCTCAACAATTCTCTCTTCTCGCTCATACTCTCCCCAGAATTTCGTCAAAACTCGAACTTTTTGCCAAATTGCTCCAAATCCCACCAAACCCATCTCTCAAACCGTGTCCTTCGACCACCCATCCCTTGATTTCTTCACAGTATGTGAAACCCTCTCCTCTTACAGCAATGACTACAATCGGGCACTTGAGTTCTTCAACTGGGTCCAAACAAATTGTGGCTTCCAACACAATACTGATACCTACAACTCCATGATTGACATTCTGGGTAAGTTTTTTGAGTTTGATAAATGCTGGGAATTGATTCAACTTATGAGAAACCATCAATTTTCGATGCCAAATTACATTACTTTCCGTATTATGTTCAAGCGTTATGTGTCTGCTCATTTTGTTCAAGAAGCCATTGGCATGTATGATAAACTAGAGGAGTTTAATTTGAAGGATGAGACATCTTTTTGTAATTTAATTGATGCCCTTTGTGAGTATAAGCATGTATTAGAAGCTGAAGATTTGTGGGTTAATAGAAGATTTCATGTTAAATTTGTGTGCCAGACTAAAGTTCATAATATAATGCTTCGTGGGTATGCAAAGATGGGGTGGTGGGGTAAGTGTAGGGAGTTCTGGGAAGAGATGGATAGGAATAAGGTTCATAAGGATTTGGTTTCGTATTCTATATATATGGATATACAATGCAAGTGTGGGAAACCTTGGAAAGCTGTAAAATTGTACAAGGAGATGAGAAGGAAAAGAATGCAATTAGATGTTGTAGCGTATAATACAGTTATACATGCCATTGGTCTTAAAGAAGGGGTTGATTTCTCAATTCGTGTGTTTAGGGAAATGATTGAATCAGGGTGTGAGCCGAATGTGGTCACATATAATACGATTATAAAGCTATTGTGTGAGGATGGGAGAATGAATGAGGCGTATAATATGTTTGATCATATGCGTAAGAAGGGTTGTGAACCGAATGTGATTACCTACCATTGCTTTTTCCGGTGTCTTGTTAAGCCTAAGGAGATGCTTAGGTTGTTTGAGGGGATGTTGGAGAGTGGAGTTCGTCCAACGATGGATACTTATGTTATGCTAATGAGAAAATTTGGGAGATGGGGTTTCCTTCGTCCTGTCTTCATTGTTTGGGATAAGATGAAGGAGCTTGGATGTAGTCCAAATGATGCTGCTTACAACGCTTTGATTGATGCTTTGGTGCAAAAGGGTATGTTGGATATGGCTAGGAAATATGATGAAGAGATGCTTGCCAAAGGGCTTTCAGCAAAACCAAGGGTTGAGCCAGGAACCAAAGAAGCAGAAGGTGGCTCTCTTGATGTAGATTTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_179120.p1 GENE.S_Transcript_179120~~S_Transcript_179120.p1 ORF type:complete len:452 (+),score=66.76,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|2.4,PPR_2|PF13041.2|0.00038,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|2.2e-09,PPR_2|PF13041.2|2.9e-19,PPR_2|PF13041.2|0.0087,PPR_2|PF13041.2|0.00016,PPR_2|PF13041.2|3.6e-05,PPR|PF01535.16|1.2e+04,PPR|PF01535.16|0.00061,PPR|PF01535.16|1.7,PPR|PF01535.16|4.4,PPR|PF01535.16|5e-05,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|0.018,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|17,PPR|PF01535.16|0.14,PPR|PF01535.16|0.0005,PPR_1|PF12854.3|6.9,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|79,PPR_1|PF12854.3|0.049,PPR_1|PF12854.3|0.0074,PPR_1|PF12854.3|1.5e-14,PPR_1|PF12854.3|0.77,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|0.00019,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|58,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|38,PPR_3|PF13812.2|1.2e-06,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|19,PPR_3|PF13812.2|0.0082 S_Transcript_179120:25-1380(+)
MRKAKILSTILSSRSYSPQNFVKTRTFCQIAPNPTKPISQTVSFDHPSLDFFTVCETLSSYSNDYNRALEFFNWVQTNCGFQHNTDTYNSMIDILGKFFEFDKCWELIQLMRNHQFSMPNYITFRIMFKRYVSAHFVQEAIGMYDKLEEFNLKDETSFCNLIDALCEYKHVLEAEDLWVNRRFHVKFVCQTKVHNIMLRGYAKMGWWGKCREFWEEMDRNKVHKDLVSYSIYMDIQCKCGKPWKAVKLYKEMRRKRMQLDVVAYNTVIHAIGLKEGVDFSIRVFREMIESGCEPNVVTYNTIIKLLCEDGRMNEAYNMFDHMRKKGCEPNVITYHCFFRCLVKPKEMLRLFEGMLESGVRPTMDTYVMLMRKFGRWGFLRPVFIVWDKMKELGCSPNDAAYNALIDALVQKGMLDMARKYDEEMLAKGLSAKPRVEPGTKEAEGGSLDVDL*

Click here to download the sequence:
Link to NCBI Protein BLAST