Transcript Information: S_Transcript_17930.p1


Annotated TAIR IDAT1G26500.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:9158380-9159897 | Forward length=505
E-Value2.1E-225
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0679173158747
Replicate 24.0224975436353
Replicate 33.9059201650351
Condition 2: 8 Hour
Replicate 14.0058744242128
Replicate 23.7904421268045
Replicate 34.004081870549
Condition 3: 24 Hour
Replicate 14.5459886453723
Replicate 23.6312184293595
Replicate 33.808853851233


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_17930.p1 GENE.S_Transcript_17930~~S_Transcript_17930.p1 ORF type:5prime_partial len:543 (+),score=87.44,PPR_2|PF13041.2|0.0042,PPR_2|PF13041.2|0.00054,PPR_2|PF13041.2|5e-05,PPR_2|PF13041.2|0.0099,PPR_2|PF13041.2|6.2e-11,PPR_2|PF13041.2|2.1e-11,PPR_2|PF13041.2|95,PPR|PF01535.16|1.7,PPR|PF01535.16|38,PPR|PF01535.16|65,PPR|PF01535.16|0.00085,PPR|PF01535.16|0.056,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|1e-06,PPR|PF01535.16|11,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|2,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|5.8e+02,PPR_1|PF12854.3|1.6e+03,PPR_3|PF13812.2|0.0084,PPR_3|PF13812.2|4e+03,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|1.2e+02 S_Transcript_17930:3-1631(+)
TCCTGTCTGAACCAGCTGCTATGGGCCTCATTTCTGGGCGACGATTTTTGTGTTCTTTTGGCGCTTTATCAATTTGGTGAGATGAATTTGAGAAGAATCACAAACTCAAGGCGATTAATTAACCTCTGCACCCAACTCCACACGCTACGACCCTTAACCACCAACCCTATACACACAACTCTCCCTAAACCAATTGATCCCACACCAAATCGACCTTTTGCCCCAGTCAACCCAGCACATCTTCTGCGAGTCTGCACAACCCTCTTTCAACAACAGAACTCACCTGATTCCAGGCTCCAAAGCAATCTTCAGAAAACTGAATTCAGTCTTAACCATGAGTTTTTCCTTCAGGTATGCAACAAATTTCCCCTCTCATGGCGACCTGTGTACTGCTTTTACAAGTTCACGTTGACGCAGCCCAGATTCACTCACACCCCTGTCACATTTAATAAGATGCTTGATGTGATTGGTAAGTCTAGGAATATTGATCTCTTCTGGGAAGTACTACATGAAATGGCACAGAAAAAAGTTGCAAGTGAGAAGACATTTAGGATTGCATTGAAAACATTGGCTGATGCTAGGGAATTGAAGAAATGTGTCGAATATTTTCACTTAATGAATTCTCATGGGTATGGCTATAGTTTAGATACTTTGAATAAAGTTGTTGAGACCCTCTGTAAGGAAAAGCTTGTTGATGAGGCTAGGCATGTTGTGTTAAAATTGAAGGATTGGATTAAGCCCGATGGAATTACTTATAAGCTCTTAATATGTGGTTTTTGTGATGTGGGAGATGTGATTGAAGCTTCAAGAACATGGAATATGATGATGGATGAAGGATTTGAAGCTGATATTGATTCTGTAAATACAATGATGGAGAGGTTTTTCAAGGATAATCAATTTCGTGAAGGAGTGAAGCTCTTTCAAACAATGAGGGTAAAGAGGATGGAGGAATTAGGACTTCCCACATATAAGATTGTGATAAAATGGATGTGTAAAAGTGGTAAGCTTTCTCAAGCTCATATGGTGTTCGATGAAATGAAAAGGAGAGGAATCCAAGTTGATAATACAACCTTGGGGTCAATAATATATGGGCTTGTGTCTAAGAATCGAGTTCGAGAGGCTTATTTGATGGTGGGAAATATTGCGAAGCCTGATATAATTGTGTACCATGCTTTGATCAGAGGATTGCTAAAACTGAGGAAGGCAGATGAGGCAACAGAAGTTTTTAGAGAGATGATAAGAAAGGGTTGCGAACCTATAATGCATACCTATATCATGTTACTGCAAGGGCATCTGGGGAAGAGGGGAAGGAAGGGGAGTGATCCCCTTGTAAATTTTGACAGCATATTTGTTGGGGGTCTGGTCAAAGCTGGAAGATTTCTGGAAGCCACCAAGTATGTTGAGAGGACAATGAAAAGAGGTCTCGAGGTGCCAAGGTTTGATTATAACAAATTCTTGCATTACTTCTCAAACGAGGAAGGTGCAGTTATGTTTGAGGAGTTTGGGCAAAAGTTAAGAGAGGCGGGATTATTTGATTTAGCAGACATATTTGTGAGATATGGGGAGAAAATGGCTTCTAGAGATAGAAGAAGAACTAGAGAAGCGCCTAATGAGCTTCCAATGACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_17930.p1 GENE.S_Transcript_17930~~S_Transcript_17930.p1 ORF type:5prime_partial len:543 (+),score=87.44,PPR_2|PF13041.2|0.0042,PPR_2|PF13041.2|0.00054,PPR_2|PF13041.2|5e-05,PPR_2|PF13041.2|0.0099,PPR_2|PF13041.2|6.2e-11,PPR_2|PF13041.2|2.1e-11,PPR_2|PF13041.2|95,PPR|PF01535.16|1.7,PPR|PF01535.16|38,PPR|PF01535.16|65,PPR|PF01535.16|0.00085,PPR|PF01535.16|0.056,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|1e-06,PPR|PF01535.16|11,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|2,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|5.8e+02,PPR_1|PF12854.3|1.6e+03,PPR_3|PF13812.2|0.0084,PPR_3|PF13812.2|4e+03,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|1.2e+02 S_Transcript_17930:3-1631(+)
SCLNQLLWASFLGDDFCVLLALYQFGEMNLRRITNSRRLINLCTQLHTLRPLTTNPIHTTLPKPIDPTPNRPFAPVNPAHLLRVCTTLFQQQNSPDSRLQSNLQKTEFSLNHEFFLQVCNKFPLSWRPVYCFYKFTLTQPRFTHTPVTFNKMLDVIGKSRNIDLFWEVLHEMAQKKVASEKTFRIALKTLADARELKKCVEYFHLMNSHGYGYSLDTLNKVVETLCKEKLVDEARHVVLKLKDWIKPDGITYKLLICGFCDVGDVIEASRTWNMMMDEGFEADIDSVNTMMERFFKDNQFREGVKLFQTMRVKRMEELGLPTYKIVIKWMCKSGKLSQAHMVFDEMKRRGIQVDNTTLGSIIYGLVSKNRVREAYLMVGNIAKPDIIVYHALIRGLLKLRKADEATEVFREMIRKGCEPIMHTYIMLLQGHLGKRGRKGSDPLVNFDSIFVGGLVKAGRFLEATKYVERTMKRGLEVPRFDYNKFLHYFSNEEGAVMFEEFGQKLREAGLFDLADIFVRYGEKMASRDRRRTREAPNELPMT*

Click here to download the sequence:
Link to NCBI Protein BLAST