Transcript Information: S_Transcript_179930.p1


Annotated TAIR IDAT3G47730.1
Annotated Gene NameATP-binding cassette A2
Annotated Gene Symbol(s)ATATH1, ATH1, ABCA2
Annotation TypeOrtholog
Chromosome Positionchr3:17594342-17598828 | Reverse length=983
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0431226614794
Replicate 21.0643355766439
Replicate 31.1677310284089
Condition 2: 8 Hour
Replicate 12.0360925428418
Replicate 22.0685528390501
Replicate 31.7781058806165
Condition 3: 24 Hour
Replicate 11.4270526903403
Replicate 21.0022188033762
Replicate 30.93790516883346


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_179930.p1 GENE.S_Transcript_179930~~S_Transcript_179930.p1 ORF type:complete len:995 (+),score=161.19,ABC_tran|PF00005.23|4.8e-22,ABC2_membrane_3|PF12698.3|2.2e-21,AAA_21|PF13304.2|0.25,AAA_21|PF13304.2|3.7,AAA_21|PF13304.2|2.9 S_Transcript_179930:180-3164(+)
ATGATGGAGTTAAAAAGGGGAATCCCATTACTAGTACAACAATTCAGATCACTAGTAGTGAAGAATGCATTACTATCATGGAGACACAAGTTGTCTACAATCCTTCAAGTCTTTTCTTCATTGGTTTTCATTTTCTTGATGTTTTGTATTCAAAGGGCAGTTGAAGCCCAGTTTAAAGGAACCACTTTTTTTGACAATATTTTGGATCCAAAACCTCTTGTTTCTCCTTCTATCCCACCTTGTGAAGACAAATTCTTCATCAAAAAGCCTTGTTTTGACTTTGTTTATAGTGGCAATTCTAGCAACAATGTTAATCGGCTTGTTGCTCGCATTATGGCTAACAATCCTGGCCGTATAATTCCCTCTTCAAAGGTTAAGTCATTTGGGACTGAGGACGAGGTTGATGCATGGCTTCTTGGCAATCCAATGCATTGTCCAGGGGCGCTGCATTTCATTGAGGAAAACGCGACTGTAATGAGCTATGGTATTCAAACTAATTCTACATCAGTACCTATGAGAGGGAAGTATGAAGATCCAACCTTCAAGTTTCAAATACCGCTTCAGGCTGCTGCAGAACGTGAGATAGCTAGGTTTCTTATTGGAGATGCGAATTTTCGCTGGACTGTTGGCTTCAAAGAATTTGCACATCCTCCTGCAGATCCGTTCAATGTAATCGGCTTTATTGGCCCGACCTTTTTCTTTGCAATGGCCTTATTTGGTTTTGTGTTTCAAATGTCTTCCCTGGTGATGGAGAAAGAACTAAAGCTTAGACAGGCAATGAGTATGATGGGTCTCTATGATACTGCCTACTGGCTATCTTGGATGACTTGGGAAGGTTTCCTTGTGGTTATTTCATCAATTTTCATCGTGCTGTTCGGGATGATGTTCCAGTTTGATTTTTTCTTGCACAATAGTTTCGCGATCTTGTTTCTTGTGTTTTTTCTTTTCCAACTGAACATGACTGCCTTTGCCTTTGCGTTGTCAGCCTTTGTCAACAAGTCAGCTTCATCCACAAGCATAGGATTCTACAGTTTCATTGTTGGATTAGTCACTCAGATTGTGACAGTGGCTGGGTTTCCATATAGCAACACGTTCTCTAAAACATACAGGGTCATATGGTCCTTGTTCCCTCCAAATCTGCTTGCCAAAGCTCTTCAGATGCTGACAGATGCCACTGCCACAAATCAAGATCCTGGACTTAGCTGGAAGGGGCGAACAAAATGTGCTCCCAATGATGATGATTGTGTGTTAACCATGAATGACGTCCTGATATGGTTCGTGGGAACATTCTTTATGTGGTATGTCTTGGCTATCTACTTTGAAAACATAATTCCAAACCCATATGGAGTAAGGAAATCAGTATTTTACTGTTTGAACCCTGGATATTGGACCGGGAAAGGCAAAACCAAGGCTCAAGAGGGTGGCATTTGTACCTGCTTTGGTTCATCCCCGCATCTTGAGCACATTACTCCAGAAGATGAGGATGTTCTGGAAGAGGAGAATACTGTAAAAGGGCAGGTCAATGAAGGTGCAGTTGATCCAAATGTTGCTGTTCAGATACGTGGTCTTGCAAAGGTGTATCCTGGGTCAACCAAGCTTGGTTGCTGTAAATGCAAGAGGACTCCACCTTATCATGCTCTAAGGGGATTATGGGTAAATCTTGCTAAGAATCAACTATTTTGCCTTTTGGGACCCAATGGAGCGGGAAAAACTACTGCCATCAATTGTTTAACTGGCATTACGCCTGTGACCAGTGGAGATGCATTGATTTATGGGCATTCCGTCAGAAGCGCTGTTGGCATGTCAAACATTCGAAGAATGATAGGAGTGTGTCCGCAGTTTGATATCCTTTGGGATGTATTGACTGGCCAAGAGCACCTCCGCCTCTTTGCAAGCATAAAGGGTCTGCCGAATGCTACAATTTCAACATTTATTCATAATTCACTGGCTCAAGTGAGATTGACTGATGCTGCCAAAATGAGAACTTCAAGTTACAGTGGTGGAATGAAACGACGTCTTAGTGTTGCAATTGCCCTTATTGGTGATCCGAAGCTAATCATTCTGGATGAACCTGTATGTATGAATTCATATAAAATTTTTCCATTCAATCTATGGAGCCATATGCCTTTAAGAGTTCTGTTGGAATTGCAGACAACAGGTATGGATCCTATTAGCAGGAGGCATGTGTGGGACATCATCGAAGATGCTAAACAAGGCAGGGCTATTATTCTAACAACACATTCAATGGAAGAAGCTGACATATTGAGTGACCGCATTGGAATCATGGCGAAAGGGAGGCTGCGATGCATTGGAACCTCAATCAGGTTGAAATCACGATTCGGAACTGGTTTTGTAGCCAATGTGAGCTTTGTTGGTAACGTAAATGGAACCCCTTCCAATGGAGATGCGATTGATACAAACTCCCAAGAAGCTCTGAAGCGTTTCTTCAAGCAACATTTGGATGTGGTGCCTAAGGAGGAGAGCAGAAGCTTCCTGACATTTTTCATTCCACATGAAAAAGAACCACTGTTAACAGGGTTTTTCGAAGAGCTACAAGAGAGAGAACGAGAATTTGGCATAGCCGACATCCAGCTTGGTCTCACCACTCTGGAAGAAGTTTTCCTAAATATTGCAAGACAGGCAGAGATGGAAAGTGCTGCTTCCGAAGGAAAACTGACCACTTTAAACTTAACAACTTCAGGAACCTCGGTTGAGATACCTACTGGAGCTCGTTACGTGGGGATACCAGGCACAGAATCTGCAGAAAATACTAGAGGTCTTATGGTTGAAGTGCACTGGGAACAAGATGATTCTGGTGCACTGTGCATTTCAGGTCATTCCCATGAAGTCCCGGTCCCAGCAAATGTTCAGCTACCGGCTGCACCACCTGTTACCCCTCGTAGAGGTTTCTTAGGTAGGACAAAGAAGATTTATGGCCTTGTTATTGATCCCGATCAGATTCCTGACACACTTTTCCGAAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_179930.p1 GENE.S_Transcript_179930~~S_Transcript_179930.p1 ORF type:complete len:995 (+),score=161.19,ABC_tran|PF00005.23|4.8e-22,ABC2_membrane_3|PF12698.3|2.2e-21,AAA_21|PF13304.2|0.25,AAA_21|PF13304.2|3.7,AAA_21|PF13304.2|2.9 S_Transcript_179930:180-3164(+)
MMELKRGIPLLVQQFRSLVVKNALLSWRHKLSTILQVFSSLVFIFLMFCIQRAVEAQFKGTTFFDNILDPKPLVSPSIPPCEDKFFIKKPCFDFVYSGNSSNNVNRLVARIMANNPGRIIPSSKVKSFGTEDEVDAWLLGNPMHCPGALHFIEENATVMSYGIQTNSTSVPMRGKYEDPTFKFQIPLQAAAEREIARFLIGDANFRWTVGFKEFAHPPADPFNVIGFIGPTFFFAMALFGFVFQMSSLVMEKELKLRQAMSMMGLYDTAYWLSWMTWEGFLVVISSIFIVLFGMMFQFDFFLHNSFAILFLVFFLFQLNMTAFAFALSAFVNKSASSTSIGFYSFIVGLVTQIVTVAGFPYSNTFSKTYRVIWSLFPPNLLAKALQMLTDATATNQDPGLSWKGRTKCAPNDDDCVLTMNDVLIWFVGTFFMWYVLAIYFENIIPNPYGVRKSVFYCLNPGYWTGKGKTKAQEGGICTCFGSSPHLEHITPEDEDVLEEENTVKGQVNEGAVDPNVAVQIRGLAKVYPGSTKLGCCKCKRTPPYHALRGLWVNLAKNQLFCLLGPNGAGKTTAINCLTGITPVTSGDALIYGHSVRSAVGMSNIRRMIGVCPQFDILWDVLTGQEHLRLFASIKGLPNATISTFIHNSLAQVRLTDAAKMRTSSYSGGMKRRLSVAIALIGDPKLIILDEPVCMNSYKIFPFNLWSHMPLRVLLELQTTGMDPISRRHVWDIIEDAKQGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFVANVSFVGNVNGTPSNGDAIDTNSQEALKRFFKQHLDVVPKEESRSFLTFFIPHEKEPLLTGFFEELQEREREFGIADIQLGLTTLEEVFLNIARQAEMESAASEGKLTTLNLTTSGTSVEIPTGARYVGIPGTESAENTRGLMVEVHWEQDDSGALCISGHSHEVPVPANVQLPAAPPVTPRRGFLGRTKKIYGLVIDPDQIPDTLFRR*

Click here to download the sequence:
Link to NCBI Protein BLAST