Transcript Information: S_Transcript_180399.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value3E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.45066579631767
Replicate 20.58991415929184
Replicate 30.46024653328059
Condition 2: 8 Hour
Replicate 10.68423712247486
Replicate 20.81750962052477
Replicate 30.47495204110921
Condition 3: 24 Hour
Replicate 11.0513580289591
Replicate 20.92917587567913
Replicate 30.89918161872072


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_180399.p1 GENE.S_Transcript_180399~~S_Transcript_180399.p1 ORF type:complete len:1122 (+),score=226.48,RVT_1|PF00078.23|1.1e-34,rve|PF00665.22|1.1e+04,rve|PF00665.22|1.2e-13,zf-H2C2|PF09337.6|7.6e-09,Asp_protease_2|PF13650.2|4.9e-07,gag-asp_proteas|PF13975.2|5.1e-07 S_Transcript_180399:236-3601(+)
ATGTTGATGGTTCGTAGAATCTTACATTCAAAGGAAGGGCCGAAAGATCACACACAAAGAGAGAACATCTTCCATACAAGATGTACCATTCAAGGCAAGGTTTGCTCTATGATTGTTGATGGAGGAAGTTGTGCCAATGCAGCCTCCACCACACTTGTCGAAAAGCTTGGGTTATCCACCACCAAGCACCCTAATCCCTACAAGCTCCAATGGCTCAACAAAGGTAATGAGGTAAAGGTCACTAAACAAGTCTCTATTCCTTTCTCCATTGGAAACATCTATAGAGATGAGGTTATGTGTGATGTGATACCTATGGATGCTTGCCATGTTTTGTTGGGTAGGCCTTGGATGTATGATAGGTATGTTTGGCATAATGGTAGGGCTAACACCTACTCTCTGTTTGTAAGTGGAAGGAAGATTGTCCTAACCTCCCTAGAACCTAAGGACTTAATCAGCCATGGTGATCAATTGAAGGCTATGTTTATGGGTAGGGTGGAATTGTGTGATGTGTTTGCTTCTTGTGGCAATGTGTTGGCATTGGTTGTTGTAGAGGAGAATGAGACCCATGGGTTGGCCGAATTACCTAGTGAGGTGAAACCCCTTTTAGAAGAGTTTTGTGATGTGTTCCCAAATGAGTTACCTCAAGGACTCCCACCTATTAGGGGAATAGAGCACCAAATTGACTTGGTTCCAGGTGCTATTCTTCCTAACAAGCCCGCTTATAGGTGTACCCCTGAGGAGTCTAGAGAGTTACAAAGACAAGTGGATGAATTGTTGGAGAGGGGATATGTGAGGACTAGCATGAGTCCATGTTCGGTTCCTGCTTTGCTAGTGCCCAAGAAGGATGGGTCTATGAGGATGTGTGTGGATAGTAGAGCTATTAACAACATCACCATCAAATATAGGTATCCCATCCCAAGGCTTGATGATATGCTTGATGAGCTTCATGGGGCTCAAGTGTTCTCCAAGATTGACCTTAGGAGTGGGTACCATCAAATCCGAATGAGGCAAGGAGATGAGTGGAAAACCGCTTTTAAGACTAAGGGGGGACTATATGAATGGACTGTCATGCCATTTGGACTATCCAATGCTCCTAGTACCTTCATGAGGTTGATGAATGAGGTACTGCGCCCTTTCCTTGGTAAATTTGTTGTTGTTTATTTTGATGATATTTTGGTTTATTCTAAAGATGTTTGTAGCCATCTTGATCACCTGAGGCAAGTATTCAACACTTTGAGGCAACATCAACTCTATGCCAAGCTTGAGAAGTGTGAATTCATGTCTTCAAGTGTTACATTCTTGGGCTATGTGGTGTCAAGTCAAGGGATTTCTATGGATCCTAGCAAGGTTGAAGCTATCAAGAGTTGGCCTATTCCTACTACACTTACGGAGGTGAGATCATTTCATGGGTTGGCTTCTTTCTATAGGAGGTTCATCAAGAACTTCTCCTCATTGGTTGCTCCTATCACGGATTGTATGAAGAAAGGGTCCTTCTCATGGACCAAATCAGCCCAAGAAGCTTTCGAATTGCTCAAGGATAAGTTAAGCTCAGCTCCTATATTGGCTCTTCCTAACTTTGAAGCTCCATTTGAGGTTGAATGTGATGCAAGTGGGGTGGGTATTGGCGCGGTTCTTGTGCAAAATGGGCGCCCCATTGCTTACTTTAGTGAGAAGTTGAGTGGCTCAAGGCTCAACTATAGCACCTATGACAAGGAGTTTTATGCTATCATTAGAGCCCTTGATCATTGGATGCATTACCTCAAACCAAGGCAATTTGTGTTGCATTCGGATCACCAAGCTCTCAAGTATATCAATGGCCAACACAAGCTCAATCCGAGGCATGCTAAATGGGTTGAGTTCCTTCAAGCCTATACATTTGTGTCTAAACACAAGTCCGGGAAAATTAATGTAGTGGCGGATGCTTTGTCTAGGAGGTATAATATGCTTTCTATCCTTGAGGCTAGGGTGCTTGGCTTTAACTTTATCAAGGAGTTATATGGGGAGGATGAAGACTTTGCCAAAATCATGAAAGATGGTCCAATGGATGCTAGAAGCTCTTTTGTGATGCAAGATGGTTTCCTATTCAAGAATGGAAGGTTGTGTGTTCCTAAGAACTCTATTAGAGATTTGTTGATTAGAGAGGTGCATGGAGGAGGTTTAGCCGGTCACTTTGGCATCAACAAGACACTTCAAGTGTTGGAAGAACACTTCTATTGGCCTAGGATGCAACAAGATGTCAAGGCCATCATCTCAAGGTGTGCTATTTGTCAACAAGCTAAATCTCATTTTCATCAAGGGGTTTATACTCCCTTGCCGGTTCCAAGTGAACCTTGGAATGATTTGAGCATGGATTTCATTGTGGCTTTACCTCGCACTCAAAGGGGCAAAGACTCAATCATGGTGGTTGTTGATAGATTCTCCAAGATGGCTCACTTCATTCCTTGCCATAAATCTAGTGATGCCGTTAATGTTGCCCACTTGTTCTTTAGAGAGGTGGTGCGCCTCCATGGAGTTCCAAGTAGTATAGTGTCGGATAGGGACACCAAGTTCCTAAGTTATTTTTGGAAGACCTTGTGGAAGTTATTGGGGACTAGGTTGCTATTTAGCACCGCCTATCATCCTCAAACCGATGGGCAAACCGAAGTCACCAATAGAACACTCTCCACTTTGCTTAGAGCCCTTGTGAGCAAGACCCAGCGAGATTGGGATTTGAAGCTACCTCATGCGGAGTTTGCCTACAACCGTTCCCCTACCTATGCAACGGGTCATTCCCCATTTGAGGTTGTCTATGGCGCTAACCCCCTCACTCCTATCGACATGACTCCTCTCCTTGTTGAATCTCAAGGAAGTAATGATGCTAGCAAGATGGTAAGAGACATTAAGAGGTTGCATGAGGAAGTCAAGGCGAGAATTGAAAGGGTAAATGAGCATTACAAGTTGAAAGCTAACAAGCACCGCAAGAAGATTGTGTATAAGCCCGGGGATTTGGTGTGGATACACTTGAGGAAAGAGAGGTTTCCCTCCAAGAGGAAAAACAAACTCATGCCTAGGGCCGAGGGTCCCTTCAAGGTCCTTGAGAGGATAAATGACAATGCCTACAAGGTGGAGTTGCCAGGTGAGTCCTCTATATCCGCTTCTTTTAATGTTGGTGATCTCTCTCCCTACCTTGATGATGAATACTTGGATGACTTGAGGGCAAGTCCTAAATCACCCGGGGAGGATGATGTGGGAACATCTAATGAAGGTGAGTCTCAAGTTGAAATCAATGCTCTCTTCTTCAAGGTTGGCTTGCTTGAATACTATGAGAATATCAACCTCCTCCTAGGGGCGCCTAAGGGGTGTTGTTTGCTCCTTAACTCTAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_180399.p1 GENE.S_Transcript_180399~~S_Transcript_180399.p1 ORF type:complete len:1122 (+),score=226.48,RVT_1|PF00078.23|1.1e-34,rve|PF00665.22|1.1e+04,rve|PF00665.22|1.2e-13,zf-H2C2|PF09337.6|7.6e-09,Asp_protease_2|PF13650.2|4.9e-07,gag-asp_proteas|PF13975.2|5.1e-07 S_Transcript_180399:236-3601(+)
MLMVRRILHSKEGPKDHTQRENIFHTRCTIQGKVCSMIVDGGSCANAASTTLVEKLGLSTTKHPNPYKLQWLNKGNEVKVTKQVSIPFSIGNIYRDEVMCDVIPMDACHVLLGRPWMYDRYVWHNGRANTYSLFVSGRKIVLTSLEPKDLISHGDQLKAMFMGRVELCDVFASCGNVLALVVVEENETHGLAELPSEVKPLLEEFCDVFPNELPQGLPPIRGIEHQIDLVPGAILPNKPAYRCTPEESRELQRQVDELLERGYVRTSMSPCSVPALLVPKKDGSMRMCVDSRAINNITIKYRYPIPRLDDMLDELHGAQVFSKIDLRSGYHQIRMRQGDEWKTAFKTKGGLYEWTVMPFGLSNAPSTFMRLMNEVLRPFLGKFVVVYFDDILVYSKDVCSHLDHLRQVFNTLRQHQLYAKLEKCEFMSSSVTFLGYVVSSQGISMDPSKVEAIKSWPIPTTLTEVRSFHGLASFYRRFIKNFSSLVAPITDCMKKGSFSWTKSAQEAFELLKDKLSSAPILALPNFEAPFEVECDASGVGIGAVLVQNGRPIAYFSEKLSGSRLNYSTYDKEFYAIIRALDHWMHYLKPRQFVLHSDHQALKYINGQHKLNPRHAKWVEFLQAYTFVSKHKSGKINVVADALSRRYNMLSILEARVLGFNFIKELYGEDEDFAKIMKDGPMDARSSFVMQDGFLFKNGRLCVPKNSIRDLLIREVHGGGLAGHFGINKTLQVLEEHFYWPRMQQDVKAIISRCAICQQAKSHFHQGVYTPLPVPSEPWNDLSMDFIVALPRTQRGKDSIMVVVDRFSKMAHFIPCHKSSDAVNVAHLFFREVVRLHGVPSSIVSDRDTKFLSYFWKTLWKLLGTRLLFSTAYHPQTDGQTEVTNRTLSTLLRALVSKTQRDWDLKLPHAEFAYNRSPTYATGHSPFEVVYGANPLTPIDMTPLLVESQGSNDASKMVRDIKRLHEEVKARIERVNEHYKLKANKHRKKIVYKPGDLVWIHLRKERFPSKRKNKLMPRAEGPFKVLERINDNAYKVELPGESSISASFNVGDLSPYLDDEYLDDLRASPKSPGEDDVGTSNEGESQVEINALFFKVGLLEYYENINLLLGAPKGCCLLLNSN*

Click here to download the sequence:
Link to NCBI Protein BLAST