Transcript Information: S_Transcript_180428.p1


Annotated TAIR IDAT3G51700.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:19179443-19181145 | Reverse length=344
E-Value1E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.96191570729568
Replicate 21.1297211520414
Replicate 30.83325614835545
Condition 2: 8 Hour
Replicate 10.32116551682429
Replicate 20.26954034505695
Replicate 30.32102180127984
Condition 3: 24 Hour
Replicate 10.78957410206967
Replicate 20.88743840509794
Replicate 30.91164015922106


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_180428.p1 GENE.S_Transcript_180428~~S_Transcript_180428.p1 ORF type:5prime_partial len:332 (+),score=24.39,PIF1|PF05970.10|1.3e-50 S_Transcript_180428:1-996(+)
GGGAAAGTCGTCGTCTTTGGTGGTGATTTCAGACAGGTTTTGCCTGTGATTCCAAAGCGCACACAGCATGAGCTGGTCGAACATAGCCTTGTTAGCTCGTACCTGTGGCCAACATTTAAGAGATTCACACTTGCAGAAAATATGCGAGCTAGGGAAGACCCAGACTTCACTGCTTTTCTACTTAGACTCGGAAATGGGGAACTACAGAACTCTGAAGAAGCAAATATTGTTCTCCCCCACAACTTTTTCTCGGTACTTCCATCAAGTGGGAATTGTTTGGAGCATTTGGTGCAGTCAGTGTTTCCCGATATGGATCACCTTGCAGCTCATCCACATGCATTTACATCACGCGTAACGCTACCTCCAACAAATGATGAGGTCGACTGTATCAACCAGATGGTCATACACAAATTCCCCGGTAAAGCATATACCTACAAGAGCTACGACACAACTGTTGACGATGACTGCAATGCTCATCCTGTGGAATTCTTGAACACCCTATGCCCCGGAGGCATGAGCCCACACTATATGATGCTCAAAGTTAATTGTCCAGTAATATTACTTCGAAATCTTAACCCCTCGGTTGGTCTATGTAATGGCACAAAACTGATTTGTCGAGACTTCAAAGCAAATGTTATTATATGTGAAATAACAACTGGGTATCGTGCTGGTGAACATGTTTTTATTCCAAGAATCAGCCTGAGGCCGTCGTCGTGTGTTAATTATCCCTACAAATTTGAGAGGCGGCAGTTTCCAATCAAACTATGCTTCGTAATGACGATAAACAAAGCTCAAGGCCAGACATTGACCGACGTTGCTGTTTATCTTGGAAAACAGTGCTTCTCTCATGGACAGCTGTACGTTGCACTGTTACGAGCAAAGAAGGCCAGTAGCATCAAGGTTTTTGTAGAGTCACTGAAACAACTTCAAACAGATTCGGTCTCTGTCACGAATATTGTTTCGTTTGATCTACTTCGGAGGGCCGGAATACGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_180428.p1 GENE.S_Transcript_180428~~S_Transcript_180428.p1 ORF type:5prime_partial len:332 (+),score=24.39,PIF1|PF05970.10|1.3e-50 S_Transcript_180428:1-996(+)
GKVVVFGGDFRQVLPVIPKRTQHELVEHSLVSSYLWPTFKRFTLAENMRAREDPDFTAFLLRLGNGELQNSEEANIVLPHNFFSVLPSSGNCLEHLVQSVFPDMDHLAAHPHAFTSRVTLPPTNDEVDCINQMVIHKFPGKAYTYKSYDTTVDDDCNAHPVEFLNTLCPGGMSPHYMMLKVNCPVILLRNLNPSVGLCNGTKLICRDFKANVIICEITTGYRAGEHVFIPRISLRPSSCVNYPYKFERRQFPIKLCFVMTINKAQGQTLTDVAVYLGKQCFSHGQLYVALLRAKKASSIKVFVESLKQLQTDSVSVTNIVSFDLLRRAGIR*

Click here to download the sequence:
Link to NCBI Protein BLAST