Transcript Information: S_Transcript_180480.p1


Annotated TAIR IDAT5G66520.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26551879-26553741 | Forward length=620
E-Value6E-100
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1686347847784
Replicate 21.2770876190977
Replicate 31.2884146964591
Condition 2: 8 Hour
Replicate 12.6390702588069
Replicate 22.6346089216445
Replicate 32.2549699063154
Condition 3: 24 Hour
Replicate 10.74124355157705
Replicate 21.0404544236647
Replicate 30.95652463811818


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_180480.p1 GENE.S_Transcript_180480~~S_Transcript_180480.p1 ORF type:5prime_partial len:501 (+),score=106.85,PPR_2|PF13041.2|0.00045,PPR_2|PF13041.2|0.1,PPR_2|PF13041.2|1.6e-08,PPR_2|PF13041.2|8.7e-09,PPR_2|PF13041.2|0.00093,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|0.38,PPR_2|PF13041.2|24,PPR_2|PF13041.2|4.7e+03,PPR|PF01535.16|17,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|0.07,PPR|PF01535.16|2e-08,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|6.8e-06,PPR|PF01535.16|0.061,PPR|PF01535.16|5.1,PPR|PF01535.16|3.1e+03,PPR|PF01535.16|15,PPR|PF01535.16|6.4e+03,PPR_3|PF13812.2|88,PPR_3|PF13812.2|60,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|0.073,PPR_3|PF13812.2|0.0038,PPR_3|PF13812.2|7.2,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|28,PPR_3|PF13812.2|3.1e+03,PPR_1|PF12854.3|32,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|0.96,PPR_1|PF12854.3|0.00021,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|3.5e+03,PPR_1|PF12854.3|0.00036,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|6.2,PPR_1|PF12854.3|1e+03 S_Transcript_180480:2-1504(+)
CGTTATTTCCTCACCACTCGCCCTGTCTTCTTTTGTGCCCTTCCACAACCAGGTTCTCTTTCTTATGCTACCAAACTTTTCCATAACTTGGAAAGATTGAATCTTTATGTTTATAATGCCCTAATTAGAGCTTATGCATGCAAACCAATTTCTGGGAAAGCCCCAGATTATTGCCCCTCTTTTTCTTTATATACTCAAATGTTAAGAAATGGTATTTGCCCTGATAGGCTTACTTTCCCATTTATCTTAAAAGAATGTACTAAAAGACTTGATTTTTATAAGGGTATGGCTGTTTATTCCCATGTTTTGAAATTTGGGTTTCATGATGATGTTTATATTCAAAATTGTATGATCTTTTTGTTGTCTGAATGTGGGTTACTGGGTTGTGCGCAGAAGTTGTTTGATGAAATGCCTCAACGAGATGTTGTTTCTTGGAATTCAATGATTGCTGGGTATTTGAGAAGCGGGGACCTTGATTTAGCATTGAGTATGTTCATGAGGATGGAAAAGAGAAGTATATATACTTGGAATTCTATGATCACAGGCTTTGTTCAAGCTGGTCAGCCAAAGATGGGTTTAAAGCTGTTCCAAGAACTGCAAGTGGTTGGGGATGATGGAGTTAGACCTGATAAAATTACTATTGCCAGTGTTCTTTCAGCTTGTGCATCTTTGGGCGCCATTGATCATGGGAATTGGGTTTACGGTTACCTGAAGAGGAATGGATTAGTGTTTGATATGGTGATTGCTACAGCATTGATTGATATGTATGGTAAATGTGGACATGTGGATAGAGCTGTTGAAATCTTCAGAGCAATGCCCAAGAAGGATGTATTAGCATGGACAGCCATGATCTCAGTCTATGCTCTTCATGGTTATGGGAAGGAAGCTTTGGCTCTTTTGAAAGAGATGGATGCACAAGGAGTGAAGCCAAACCATGTCACCTTTGTCGGGCTTTTGTCAGCATGTGCTCATTCTGGCTTGGTAGAGGAAGGTCGATGGTGCTTTGATGTGATGACTAGTGTTTACTCAATTGAGCCCTGTGTTTATCACTATGCATGTATGGTCGATATACTTAGTCGAGCAGCTTTATTTGATGAGGCAGAACAACTGATCAGTGGGATGCTGGTTGAGCCTGATGTGTATGTTTGGGGTGCATTGCTTGGTGGCTGTCAAATGCACAAAAATGTTCAGCTAGGGGAGAAGGTTGCTTTGAGATTAATTGATTTAGATCCCCAAAACCATGCTTTCTACATTAACCTTTGTGACATATATGCCAAAGCTGGTAGATTTGGTGATGTAAAGAGAGTAAGAGCCATCATGCAAGAGAAAGGAATTAAGAAAGATACACCAGGCTCGAGCATGATTGAAGTTGATGGCATTGTTCTGGAATTCTCTGTTAGAGGATCAACTGAACTTCTGATGGAGGAACTTGTTTGGTTATTGTGTAGACTACATAATGAGATGAAGAAAGGTTCCAATATGAATGATATTGGTGATGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_180480.p1 GENE.S_Transcript_180480~~S_Transcript_180480.p1 ORF type:5prime_partial len:501 (+),score=106.85,PPR_2|PF13041.2|0.00045,PPR_2|PF13041.2|0.1,PPR_2|PF13041.2|1.6e-08,PPR_2|PF13041.2|8.7e-09,PPR_2|PF13041.2|0.00093,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|0.38,PPR_2|PF13041.2|24,PPR_2|PF13041.2|4.7e+03,PPR|PF01535.16|17,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|0.07,PPR|PF01535.16|2e-08,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|6.8e-06,PPR|PF01535.16|0.061,PPR|PF01535.16|5.1,PPR|PF01535.16|3.1e+03,PPR|PF01535.16|15,PPR|PF01535.16|6.4e+03,PPR_3|PF13812.2|88,PPR_3|PF13812.2|60,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|0.073,PPR_3|PF13812.2|0.0038,PPR_3|PF13812.2|7.2,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|28,PPR_3|PF13812.2|3.1e+03,PPR_1|PF12854.3|32,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|0.96,PPR_1|PF12854.3|0.00021,PPR_1|PF12854.3|1.8,PPR_1|PF12854.3|3.5e+03,PPR_1|PF12854.3|0.00036,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|6.2,PPR_1|PF12854.3|1e+03 S_Transcript_180480:2-1504(+)
RYFLTTRPVFFCALPQPGSLSYATKLFHNLERLNLYVYNALIRAYACKPISGKAPDYCPSFSLYTQMLRNGICPDRLTFPFILKECTKRLDFYKGMAVYSHVLKFGFHDDVYIQNCMIFLLSECGLLGCAQKLFDEMPQRDVVSWNSMIAGYLRSGDLDLALSMFMRMEKRSIYTWNSMITGFVQAGQPKMGLKLFQELQVVGDDGVRPDKITIASVLSACASLGAIDHGNWVYGYLKRNGLVFDMVIATALIDMYGKCGHVDRAVEIFRAMPKKDVLAWTAMISVYALHGYGKEALALLKEMDAQGVKPNHVTFVGLLSACAHSGLVEEGRWCFDVMTSVYSIEPCVYHYACMVDILSRAALFDEAEQLISGMLVEPDVYVWGALLGGCQMHKNVQLGEKVALRLIDLDPQNHAFYINLCDIYAKAGRFGDVKRVRAIMQEKGIKKDTPGSSMIEVDGIVLEFSVRGSTELLMEELVWLLCRLHNEMKKGSNMNDIGDE*

Click here to download the sequence:
Link to NCBI Protein BLAST