Transcript Information: S_Transcript_180603.p1


Annotated TAIR IDAT5G47180.1
Annotated Gene NamePlant VAMP (vesicle-associated membrane protein) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19161384-19163265 | Reverse length=220
E-Value3E-76
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.925091877652
Replicate 29.6861027325675
Replicate 38.5466337948393
Condition 2: 8 Hour
Replicate 17.8019720672438
Replicate 27.093512983328
Replicate 36.6287087064271
Condition 3: 24 Hour
Replicate 110.789241236208
Replicate 211.055517842121
Replicate 39.2275772213839


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_180603.p1 GENE.S_Transcript_180603~~S_Transcript_180603.p1 ORF type:3prime_partial len:164 (+),score=34.54,Motile_Sperm|PF00635.22|3.9e-29,Motile_Sperm|PF00635.22|8.3e+03 S_Transcript_180603:292-780(+)
ATGGTCGCTACCATGACCATGACGACCACTACTAAACAGTTGATCTCTGTTCATCCTGAGGAGCTAAAGTTTGTTTTTGAGCTGGAGAAGCAAAGCTTTTGTGACCTGAAAGTTACAAACAACACAGAGCAAAATGTTGCATTTAAGGTCAAGACCACTTCACCTAAGAAGTACTTTGTTCGGCCCAATACTGGTGTTATACATCCCTGGGACTCATGTGTCATAAGAGTCACTCTCCAGGCTCAGAGGGAATACCCACCAGATATGCAGTGCAAGGATAAGTTTCTTCTTCAAAGTACAATTGTGTCACCCAATAGCGAAGTTGATGAACTTCCTCAAGACACTTTTAACAAAGACAGTGGAAGGGTTATTGAAGAATGCAAACTCAGGGTTGTATATGCTTCTCCATCAGCTCAGGGTAATTCTGATGATGACTCAGCAAACTCTGCAAGAGGTCTAAATGTTCATGACAATTTTAGTGTTGAAGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_180603.p1 GENE.S_Transcript_180603~~S_Transcript_180603.p1 ORF type:3prime_partial len:164 (+),score=34.54,Motile_Sperm|PF00635.22|3.9e-29,Motile_Sperm|PF00635.22|8.3e+03 S_Transcript_180603:292-780(+)
MVATMTMTTTTKQLISVHPEELKFVFELEKQSFCDLKVTNNTEQNVAFKVKTTSPKKYFVRPNTGVIHPWDSCVIRVTLQAQREYPPDMQCKDKFLLQSTIVSPNSEVDELPQDTFNKDSGRVIEECKLRVVYASPSAQGNSDDDSANSARGLNVHDNFSVED

Click here to download the sequence:
Link to NCBI Protein BLAST