Transcript Information: S_Transcript_180615.p1


Annotated TAIR IDAT5G47180.1
Annotated Gene NamePlant VAMP (vesicle-associated membrane protein) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19161384-19163265 | Reverse length=220
E-Value1.8E-89
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 139.402744547233
Replicate 236.093010101371
Replicate 336.348305096805
Condition 2: 8 Hour
Replicate 126.294413303649
Replicate 222.914854674671
Replicate 323.902722314324
Condition 3: 24 Hour
Replicate 141.462861382633
Replicate 241.697012560367
Replicate 340.771557217979


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_180615.p1 GENE.S_Transcript_180615~~S_Transcript_180615.p1 ORF type:5prime_partial len:206 (+),score=51.05,Motile_Sperm|PF00635.22|1.7e-26,Motile_Sperm|PF00635.22|4.8e+03 S_Transcript_180615:3-620(+)
GAGCTGGAGAAGCAAAGCTTTTGTGACCTGAAAGTTACAAACAACACAGAGCAAAATGTTGCATTTAAGGTCAAGACCACTTCACCTAAGAAGTACTTTGTTCGGCCCAATACTGGTGTTATACATCCCTGGGACTCATGTGTCATAAGAGTCACTCTCCAGGCTCAGAGGGAATACCCACCAGATATGCAGTGCAAGGATAAGTTTCTTCTTCAAAGTACAATTGTGTCACCCAATAGCGAAGTTGATGAACTTCCTCAAGACACTTTTAACAAAGACAGTGGAAGGGTTATTGAAGAATGCAAACTCAGGGTTGTATATGCTTCTCCATCAGCTCAGGGTAATTCTGATGATGACTCAGCAAACTCTGCAAGAGGTCTAAATGTTCATGACAATTTTAGTGTTGAAGATAATCAGGCTTTGCAGCGTGTGAGAGAGGAAAGGGATGCAGCTATCCGGCAAACACAGCAACTGCAACAGGAATTGGATGTGTTGAAGAGACGCAGACTGCGCAAAAGTAATGCTGGTTTCTCGTTGAGATTTGCTCTTTTTGTGGCGATCATAGGGATTATGCTTGGCTTCCTCTTAAAACTTTCATTTTCTTCATCATCAGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_180615.p1 GENE.S_Transcript_180615~~S_Transcript_180615.p1 ORF type:5prime_partial len:206 (+),score=51.05,Motile_Sperm|PF00635.22|1.7e-26,Motile_Sperm|PF00635.22|4.8e+03 S_Transcript_180615:3-620(+)
ELEKQSFCDLKVTNNTEQNVAFKVKTTSPKKYFVRPNTGVIHPWDSCVIRVTLQAQREYPPDMQCKDKFLLQSTIVSPNSEVDELPQDTFNKDSGRVIEECKLRVVYASPSAQGNSDDDSANSARGLNVHDNFSVEDNQALQRVREERDAAIRQTQQLQQELDVLKRRRLRKSNAGFSLRFALFVAIIGIMLGFLLKLSFSSSSA*

Click here to download the sequence:
Link to NCBI Protein BLAST