Transcript Information: S_Transcript_181077.p1


Annotated TAIR IDAT5G54080.1
Annotated Gene Namehomogentisate 1,2-dioxygenase
Annotated Gene Symbol(s)HGO
Annotation TypeOrtholog
Chromosome Positionchr5:21945920-21948070 | Forward length=461
E-Value1.8E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.214158055812
Replicate 219.145395897017
Replicate 323.320153890834
Condition 2: 8 Hour
Replicate 128.903834809998
Replicate 227.91858797189
Replicate 326.600768498778
Condition 3: 24 Hour
Replicate 122.205955944984
Replicate 215.920859371814
Replicate 317.301071782022


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_181077.p1 GENE.S_Transcript_181077~~S_Transcript_181077.p1 ORF type:5prime_partial len:121 (-),score=17.36,HgmA|PF04209.9|5.3e-30 S_Transcript_181077:247-609(-)
GGTGCTTTGATAAATTATGTCTCTAAATCTTTGGTGGAATTTACATTTCAATTGGTTTGTTTCTTGATCAACCTGCAGGCAAAGGCTGACGGGTTTCTCCCTGGTGGTGCGAGTCTACATAGTTGCATGACACCACATGGTCCAGATACTAAGACTTATGAGGCAAATATTGCCCGAGGGGAGAACACAGGACCAAGCAAAATTACAGACACTATGGCATTCATGTTTGAATCATATCTCATCCCTCGAGTTTGCCCGTGGGCTCTCGAGTCTCCGTTCCTGGATGAGGATTACTACCAGTGCTGGATTGGACTGAAATCTCATTTTGGTGAAGAGCAAACTTCTAATAGCTCCACTGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_181077.p1 GENE.S_Transcript_181077~~S_Transcript_181077.p1 ORF type:5prime_partial len:121 (-),score=17.36,HgmA|PF04209.9|5.3e-30 S_Transcript_181077:247-609(-)
GALINYVSKSLVEFTFQLVCFLINLQAKADGFLPGGASLHSCMTPHGPDTKTYEANIARGENTGPSKITDTMAFMFESYLIPRVCPWALESPFLDEDYYQCWIGLKSHFGEEQTSNSSTV*

Click here to download the sequence:
Link to NCBI Protein BLAST