Transcript Information: S_Transcript_181388.p1


Annotated TAIR IDAT5G55710.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22554995-22555624 | Reverse length=209
E-Value4.5E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 138.698721979597
Replicate 235.82673166679
Replicate 346.106840209001
Condition 2: 8 Hour
Replicate 138.933510762472
Replicate 238.483684586686
Replicate 345.565068733584
Condition 3: 24 Hour
Replicate 136.775560738753
Replicate 236.594778325111
Replicate 331.122614426497


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_181388.p1 GENE.S_Transcript_181388~~S_Transcript_181388.p1 ORF type:complete len:218 (+),score=37.88,TIC20|PF16166.1|7.6e-53 S_Transcript_181388:278-931(+)
ATGGCTACAGCTTATCTCCTTTCATCACCATCACCACTCATCTTGTTATCACCCAAAACCAAAACCCTTTACTCAACTTCTCTTGTTCCTTTCAAAGACCACACCTTTACCTCCTTAACAAGAAAACCCATTTCCCAAACCAACCCAAAAGGTTTAATCTTTGTCCAATCCAAGAAAAACAACACTGAAACAGCTGATATCCCTGATAGATTAATCTCAGCAATATGCTACTTTTACCCCTTTTTTGATGGCATTCAATATGGGAAATATGTAATTACCCAATTCACCCCTTTTCAAGTCCTCATTCAACCCTTAATCCCAGCTATAAGGGCTTTTAAGAGCTTCCCCTTTAATGGGTTCTTGGTGTTTTTGACCCTTTACTTTGTTGTTGTTAGGAACCCTAATTTTAGTAGGTATGTGAGGTTTAATACTATGCAAGCTATTGTGCTTGATGTTTTGTTGATTTTTCCTGATCTTTTGGAGAGAACTTTTAACCCAAAAGGTGGGTTTGGCTTGGATTTGATGATGAGTTTGGATAGTACTGTGTTTTTGTTCTTGTTGGTGAGCTTGATTTATGGGTCTTCTTCTTGTGCTTTGGGTGAAGTTCCTAGGTTGCCAATTGTTGCTGAAGCTGCTGAGAGGCAAGTCCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_181388.p1 GENE.S_Transcript_181388~~S_Transcript_181388.p1 ORF type:complete len:218 (+),score=37.88,TIC20|PF16166.1|7.6e-53 S_Transcript_181388:278-931(+)
MATAYLLSSPSPLILLSPKTKTLYSTSLVPFKDHTFTSLTRKPISQTNPKGLIFVQSKKNNTETADIPDRLISAICYFYPFFDGIQYGKYVITQFTPFQVLIQPLIPAIRAFKSFPFNGFLVFLTLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERTFNPKGGFGLDLMMSLDSTVFLFLLVSLIYGSSSCALGEVPRLPIVAEAAERQVP*

Click here to download the sequence:
Link to NCBI Protein BLAST