Transcript Information: S_Transcript_182768.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.81714035398203
Replicate 30
Condition 2: 8 Hour
Replicate 10.78982927100493
Replicate 20.55239132443769
Replicate 30.26315861240718
Condition 3: 24 Hour
Replicate 10.8090697589109
Replicate 21.1192005716715
Replicate 30.31138326426069


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_182768.p3 GENE.S_Transcript_182768~~S_Transcript_182768.p3 ORF type:3prime_partial len:81 (+),score=24.54,UBN2_3|PF14244.2|4.5e-18 S_Transcript_182768:1151-1390(+)
ATGGCTACTGTTGTTCTTGATTCTGGTCATCCTATGTATCTAGATCCAAGTGACAGTCCTGGTATGGCTCTTGTTTCCAAAATTTTTGATGGTACAGCATTCAGTTCATGGAAGAAATCTATCACTATTGCTATTTCTGCTAAGAATAAATCTGGTTTCATTGATGGTTCTTGTGCTTGTCCTGATCTTGATGATCCACTATACAAAGTTTGGGTTAGATGTGATAACATGGTAACTTCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_182768.p3 GENE.S_Transcript_182768~~S_Transcript_182768.p3 ORF type:3prime_partial len:81 (+),score=24.54,UBN2_3|PF14244.2|4.5e-18 S_Transcript_182768:1151-1390(+)
MATVVLDSGHPMYLDPSDSPGMALVSKIFDGTAFSSWKKSITIAISAKNKSGFIDGSCACPDLDDPLYKVWVRCDNMVTS

Click here to download the sequence:
Link to NCBI Protein BLAST