Transcript Information: S_Transcript_182980.p1


Annotated TAIR IDAT5G43420.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:17451790-17452917 | Forward length=375
E-Value9.4E-82
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.75177969590905
Replicate 20.1869727928603
Replicate 30.20839249811978
Condition 2: 8 Hour
Replicate 10.30120607792561
Replicate 20.4423811877912
Replicate 30.30107129385567
Condition 3: 24 Hour
Replicate 10.12341742085082
Replicate 20.51217653279881
Replicate 30.35624356504401


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_182980.p1 GENE.S_Transcript_182980~~S_Transcript_182980.p1 ORF type:complete len:354 (+),score=19.59,zf-RING_2|PF13639.2|1.3e+04,zf-RING_2|PF13639.2|9.4e-14,zf-RING_11|PF17123.1|1e-09,zf-rbx1|PF12678.3|3.6e-08,zf-C3HC4|PF00097.21|1.2e-05 S_Transcript_182980:297-1358(+)
ATGAATCTCTCACCGCCGCCGCCGCCGCCGCCGCTACAACCACCATCTTCTCTATTCCACCTCCCAATCCACACATCATCAGGCAACAGTTTCCCCGTCATAGCAATCGCGCTAATCGGAATCCTAGCGACTGCATTCTTACTAGTAGGCTACTATGTCTTCGTCATCAAATGCTGCTTAAACTGGCACCGTCTCAACGTCCTCTCGAGATTCTCCTCTCGCCGTCATCATTCCCCCAACGACGCAGTTTCCTCCTCCGAAGTCGCCCCTAAGGGCCTCGACGAGGCCGTCATCCGCTCTATCCCCGTCATCAAGTTCCGCAAGCTCCCCGAGCAAGAAAGAGGAGCAGATTCTATCAACAGAATGAACATAAACCAAACCATTCCTAAAAGCACGAATACTAATACTTACGAATGTGCAGTTTGTTTGAGCGAGTTTGAAGACGATGAGAGGCTCAGAGTGATTCCCAATTGTTGTCACGCTTTCCACATCGACTGTATCGATGTTTGGCTACAAAGCAACGCTAACTGCCCGCTTTGTAGATCCACCATTTCTGTCTCTTCTATCCTCTACAACAATGTCGACCGGATCTCGTTAAACCCTCCTCCTAGACCATTGTCGCCACCGTCACCTTGTGCTGGTGACGACAATACGGATGACGACAGTGATTATGTCGTCATCGAAATCCAAGGGAACAATCTCGACCACCCGAGATTCGTATCCGAGGAAATGTTTTTACAAGATAAGAAGAAACACGGAAAGAAGAAGTTGGAGCACGTGTGCAGTATGGGAGACGAGTGGATTGATATGAGAAAGAAAGATGAAGAGTTTAAGGATGTTGTTCAGCCCATCAGGAGGTCCATTTCTATGGATTTGTCAGTTGATCGAGAATTTTGGCTTGAAATTCAGCAATGTAGCAGTAAGTTGGTCTGCTCTGAAGATTATAGTAGTACTCCTAATATTAGTGGTAGCAAAGTGAGAAGATCTATTTTCTCTTTTGGTCATGGCAGACGAAGTTCTCGAGGTTCTAATTCTGTTCAACCTCTTCATTTAGATCCGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_182980.p1 GENE.S_Transcript_182980~~S_Transcript_182980.p1 ORF type:complete len:354 (+),score=19.59,zf-RING_2|PF13639.2|1.3e+04,zf-RING_2|PF13639.2|9.4e-14,zf-RING_11|PF17123.1|1e-09,zf-rbx1|PF12678.3|3.6e-08,zf-C3HC4|PF00097.21|1.2e-05 S_Transcript_182980:297-1358(+)
MNLSPPPPPPPLQPPSSLFHLPIHTSSGNSFPVIAIALIGILATAFLLVGYYVFVIKCCLNWHRLNVLSRFSSRRHHSPNDAVSSSEVAPKGLDEAVIRSIPVIKFRKLPEQERGADSINRMNINQTIPKSTNTNTYECAVCLSEFEDDERLRVIPNCCHAFHIDCIDVWLQSNANCPLCRSTISVSSILYNNVDRISLNPPPRPLSPPSPCAGDDNTDDDSDYVVIEIQGNNLDHPRFVSEEMFLQDKKKHGKKKLEHVCSMGDEWIDMRKKDEEFKDVVQPIRRSISMDLSVDREFWLEIQQCSSKLVCSEDYSSTPNISGSKVRRSIFSFGHGRRSSRGSNSVQPLHLDP*

Click here to download the sequence:
Link to NCBI Protein BLAST