Transcript Information: S_Transcript_184100.p2


Annotated TAIR IDAT1G45474.1
Annotated Gene Namephotosystem I light harvesting complex gene 5
Annotated Gene Symbol(s)LHCA5
Annotation TypeHomolog
Chromosome Positionchr1:17179353-17180439 | Forward length=256
E-Value2E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29570001372423
Replicate 21.225710530973
Replicate 30.13661285987852
Condition 2: 8 Hour
Replicate 10.078982927100493
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 21.9306209861333
Replicate 30.18682995855642


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_184100.p2 GENE.S_Transcript_184100~~S_Transcript_184100.p2 ORF type:5prime_partial len:270 (+),score=-39.13,Chloroa_b-bind|PF00504.17|2.8e-36 S_Transcript_184100:2-811(+)
TCGATACCCCGTTCGCTCGGTAGCTTGCGTGTTTCAAGCGTCCTCGCTTGCGAATCCGATCCAGCAACCATGATGAACGCGCGATGCACCAACGCCGCCCGCATGGGCGCCTTCCTGCGGCCAGCGCAGCAACGCGGCGGCAGCGTCGTGGCCCAAGCCAACCGTGAGACCTGGTACCCTGGCGCAGAGCCGCCAGCCTACCTTGATGGCTCCATGGCGGGCGACCGCGGCTTCGACCCGCTCCGCTTCGGCGCCAACCAGGAGGCGCTCGCGTGGTACCGCGAGGCGGAGCTCTACAACGGCCGCGTCGCGATGATGGCCGTCGTGGGCATCCTCTTCACCGACGCCGTGGGCCTGCCCAAGTGGTGGCTCGCGGGCGCCGAGCGGTACGCGCTGAGCAATAAGACGCTCGTCATCATCGAGGCCGCGACGTTCGCGGTGCTCGAGTACAAGCGCTACGACAACTTCAAGAAGAAGGGCCAGACAGGCTTCCTCGGCATGGCGCCCTTTGACCCCGCCGGCCTGAACAGCGACAAGATGCAGGAGCGGGAGATCAAGAACGCGCGGCTCGCGATGATTGCCTTCCTCGGTATCGCCAGCCAGACCGCGGTCCGCGGCAAGGGCCCCGTTGACTGCCTCAAGGACCACATGGCGGACCCGGGCCACGTCAACATCTGCACCAGCAGCGTGGGCGTGGAGGCCACCGCCGCCGCGTGCGTGCTCGCGTTTGCGCCCATCATCATCGAGGCCCGCAAGAGCATCGGCGCCAGCGACGAGAACGACGAGGACCTGAAGCCCATCCCGTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_184100.p2 GENE.S_Transcript_184100~~S_Transcript_184100.p2 ORF type:5prime_partial len:270 (+),score=-39.13,Chloroa_b-bind|PF00504.17|2.8e-36 S_Transcript_184100:2-811(+)
SIPRSLGSLRVSSVLACESDPATMMNARCTNAARMGAFLRPAQQRGGSVVAQANRETWYPGAEPPAYLDGSMAGDRGFDPLRFGANQEALAWYREAELYNGRVAMMAVVGILFTDAVGLPKWWLAGAERYALSNKTLVIIEAATFAVLEYKRYDNFKKKGQTGFLGMAPFDPAGLNSDKMQEREIKNARLAMIAFLGIASQTAVRGKGPVDCLKDHMADPGHVNICTSSVGVEATAAACVLAFAPIIIEARKSIGASDENDEDLKPIPW*

Click here to download the sequence:
Link to NCBI Protein BLAST