Transcript Information: S_Transcript_18453.p1


Annotated TAIR IDAT5G16420.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5368034-5369641 | Forward length=535
E-Value3E-213
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.4690453833039
Replicate 29.7919122193465
Replicate 38.7723875753456
Condition 2: 8 Hour
Replicate 110.103602528529
Replicate 210.348027367065
Replicate 310.777675755328
Condition 3: 24 Hour
Replicate 18.1816043035933
Replicate 28.3185525636032
Replicate 36.8014501766605


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_18453.p1 GENE.S_Transcript_18453~~S_Transcript_18453.p1 ORF type:complete len:534 (+),score=67.27,PPR_2|PF13041.2|4.1e+03,PPR_2|PF13041.2|6.5e-07,PPR_2|PF13041.2|7.1e-12,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|8.9e-18,PPR_2|PF13041.2|0.0056,PPR_2|PF13041.2|0.0021,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|5.8e-20,PPR_2|PF13041.2|3.8e-13,PPR_1|PF12854.3|8.8e+03,PPR_1|PF12854.3|4.9e-12,PPR_1|PF12854.3|0.0079,PPR_1|PF12854.3|3.3e-12,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.36,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|6.3e-06,PPR_1|PF12854.3|2.5e-12,PPR_1|PF12854.3|0.19,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|6.2,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.015,PPR|PF01535.16|3.9e-09,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.17,PPR|PF01535.16|0.00092,PPR|PF01535.16|6.8e-07,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|7e+02,PPR_3|PF13812.2|4.5e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|4.5e-05,PPR_3|PF13812.2|41,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|0.00063,PPR_3|PF13812.2|1e+04 S_Transcript_18453:207-1808(+)
ATGTCAACACTTTTCCGGCAACACCTCTCCACCACCGATAACCGCCTTCTCAGGTGTATCTCCACCGTCTCATACTCCTACAAAATAACCCCACCCATAAAACCATTTCCCAAAACCCTTTCCCCAAAACGCCTCGTTTCACTCATCAACCGCCAACAAAACCTCGACCTTGCCCTTCAAATCTTCAACTACGCCTCCCAAAATCACCCAAACTCCGCTCTTAACTACCCCACCTACCTCTCCATAGTCACGCGCCTCGCACGTGCCCGCCAGTTTCCCCAACTCGAAACCCTCTTAACCCAACTCCAAACCCACCAACCCCACATCAAATGTGGGGAAATCCTCTTTGTAACCGTCATTCGAAACTACGGTCTTGCAAGTCGCCCAAACGACGCCGTTCGGACCTTCTTGAGGGCCCCACGTTTCGCGGTAAATCGGTCGGTACGTAGCTTGAATTGTTTATTGAATGCCCTTGTACAGAATAAGAAATTTGATTGGGTTTATTTGATTTTCAAGAACTGTAGGACTAGGTTTAATGTTGTTCCTAATATTTTTACATTTAATATTCTTGTTAAAGCCCTTTGTAAGAAGGGTGATGTTGATGGTGCTATTGGGTTGTTAGATGACATGGCTGGTATGGGTATGATTCCCAATGTTGTTACTTATACTACTATTTTAGGTGGGTTTGTTGAGAAAAGGGATATGGTGGGTGCTGAGAGGATTTTTCAGATGATTTTGGATAGAGGATGGGTCCCGGATGCGACGACGTATACGGTTTTGATGGATGGGTATTGTAAGGTTGGGAAGTTGGAGGATGCTATTAGGGTTATGGATGATATGGAGGAGAATGGGGTTAGGGCAAATGAGATTACGTATGGGGTTATGATCGAAGCGTATTGCAAGGGGAGGATGTCCGGGGAGGCGGTTAGTTTGGTTGGGGATATGTTGGAGAGGAAGTATGTCCCTAGCTCCGCGTTGTGTTGTAAGGTGATTGATCTTTTGTGCGAGGAGGGAAAGGTTGAGGACGCATGTGGCTTGTGGAGGATGCTCTTGAAGAAGAATGTGACCCCGGATAATGGGGTTTCAAGTACGCTTATTCATTGGCTTTGTAAGGAGGGGAAGGTTCTTGAGGCGAGGAGGTTGTTTGATGAGTTTGAGAGTTCTGTTCCGAGTTTGTTGACTTATAATGCCTTGATCTCGGGGTTGTGTGAAGTTGGGGAGTTGTGTAAGGCGGGAAGGTTGTGGGATGATATGGTCGAGAAAGGTTGTCGTCCTAACGCTTTTACTTATAATGTGTTGATTAGAGGTTTTTGTAAGATTGGGAATCCCAAGGAGGGCATGAGGGTTTTGGATGAGATGTTTGCCAGAAGATGTTTTCCTAACGAAACGACTTATAGGATATTGATTGAGGGGCTGTTAGCCTTAGAATTGGATGCTGAAGTCATGGAGTTGCTTTATGTGGTTGTTAGCAAGGGAGGAAAGATTGATGCAAGTTCATGGAAAGTTCTTCTTGCCCACACTCTTGTTGATGTGGATACCGGCGCAGCTCTTGACAGTATCCTGCCCAAGAATGAGCATCATGACTCAATTCTTGCAGTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_18453.p1 GENE.S_Transcript_18453~~S_Transcript_18453.p1 ORF type:complete len:534 (+),score=67.27,PPR_2|PF13041.2|4.1e+03,PPR_2|PF13041.2|6.5e-07,PPR_2|PF13041.2|7.1e-12,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|8.9e-18,PPR_2|PF13041.2|0.0056,PPR_2|PF13041.2|0.0021,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|5.8e-20,PPR_2|PF13041.2|3.8e-13,PPR_1|PF12854.3|8.8e+03,PPR_1|PF12854.3|4.9e-12,PPR_1|PF12854.3|0.0079,PPR_1|PF12854.3|3.3e-12,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|0.36,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|6.3e-06,PPR_1|PF12854.3|2.5e-12,PPR_1|PF12854.3|0.19,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|6.2,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.015,PPR|PF01535.16|3.9e-09,PPR|PF01535.16|4.7e-05,PPR|PF01535.16|0.17,PPR|PF01535.16|0.00092,PPR|PF01535.16|6.8e-07,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|7e+02,PPR_3|PF13812.2|4.5e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|53,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|5.8,PPR_3|PF13812.2|4.5e-05,PPR_3|PF13812.2|41,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|0.00063,PPR_3|PF13812.2|1e+04 S_Transcript_18453:207-1808(+)
MSTLFRQHLSTTDNRLLRCISTVSYSYKITPPIKPFPKTLSPKRLVSLINRQQNLDLALQIFNYASQNHPNSALNYPTYLSIVTRLARARQFPQLETLLTQLQTHQPHIKCGEILFVTVIRNYGLASRPNDAVRTFLRAPRFAVNRSVRSLNCLLNALVQNKKFDWVYLIFKNCRTRFNVVPNIFTFNILVKALCKKGDVDGAIGLLDDMAGMGMIPNVVTYTTILGGFVEKRDMVGAERIFQMILDRGWVPDATTYTVLMDGYCKVGKLEDAIRVMDDMEENGVRANEITYGVMIEAYCKGRMSGEAVSLVGDMLERKYVPSSALCCKVIDLLCEEGKVEDACGLWRMLLKKNVTPDNGVSSTLIHWLCKEGKVLEARRLFDEFESSVPSLLTYNALISGLCEVGELCKAGRLWDDMVEKGCRPNAFTYNVLIRGFCKIGNPKEGMRVLDEMFARRCFPNETTYRILIEGLLALELDAEVMELLYVVVSKGGKIDASSWKVLLAHTLVDVDTGAALDSILPKNEHHDSILAV*

Click here to download the sequence:
Link to NCBI Protein BLAST