Transcript Information: S_Transcript_184916.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21519947090442
Replicate 20.2081395241275
Replicate 30.049710878931538
Condition 2: 8 Hour
Replicate 10.17244250930296
Replicate 20.36180887287968
Replicate 30.057455114838225
Condition 3: 24 Hour
Replicate 10.41216761303008
Replicate 20.33598642498628
Replicate 30.40790368310161


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_184916.p1 GENE.S_Transcript_184916~~S_Transcript_184916.p1 ORF type:complete len:742 (+),score=132.17,UBN2_3|PF14244.2|2.2e-39,UBN2_3|PF14244.2|3.2e+03,rve|PF00665.22|1.9e+03,rve|PF00665.22|1e-10,Retrotrans_gag|PF03732.13|3e-08,gag_pre-integrs|PF13976.2|3.5e-07 S_Transcript_184916:1683-3908(+)
ATGTCTTCAGAGACTACTTCTGTTATTGATCCTTCAAATCCTCTTTACCTTCATCCTTCTGATAATCTTGGAATGATTCTTATTACCAAGCCGTTTGATGGCAATGGCTTTGGTTCATGGAAGAAAGCTTTCACTATCGCTTTATCAGCCAAAAACAAGCTAGGATTTGTTACTGGAAAGGTTGTTAAGCCTGATTCTACAGATAAAAACCTCAATCAATGGCAATGCTGCAATGATATGATTACCTCCTGGATTCTGAATGTTCTTTCTCGAGACATTGCAGAAAGTGTGATTTATTCAGATTCTGCTCAGGACATCTGGAATGAACTGGATGATAGATATGGCCAATCCAATGGACCTAAGTTGTATCAACTTCAGAAAGATCTTTGTTCTATGTCTCAAGAAGGTATTGATATTGCAAGTTACTTCACTAAATTCAAGTCTATTTGTGATGAATTGACTGCACTTTCAACTATTCCTTCGTGCACCTGTGGTTCTGCTATTCAATTTCTTAAGATTCAGCAAGATCAGAGACTTGTTCAATTCTTGATGGGACTTAATGATGACTATAATGTTGCTCGTGGTAATATTCTGATGATGAAGCCCCTACCATCTATATCAACTGCATATGGTTTGTTAATTTCTGATGAAAAACAAAAGGAAATTCATGCTGCCTCACATATTCTTCCCGAGTCATCTGCATTGGCTGTTAAATCTGGACACAAGTTTCAATCATCTTCATATAATACTCCCAATTACAATCATCAATCTGGATTCAGAAAGTCTATCATATGCAATCATTGCAAGAAACCTGGTCACACAGCTAACAAGTGCTACAGGTTGATTGGATTTCCCAAGGACTTCAAATTCACTAAGAATTCAAGAATGGCTGCTAATGTGTACTCTGAAGACTCTGAATCAATTCCGATTTCTGAACATTTTTCTCCTGATCAATCTCAACAATCTCAGCATCACACTCTCACTTCAGAACAATATCAACAGTTTTTGGCTCTCATCAATAATACTTCTATTCATTCTCCTCCTGCTGTTTCTGCTAACACTGTGATTGGTCATGATTCTTCTGGCATTTCTTCAGCTGTCAACTTTGCAGGTAAAATTGTTAGTACTTCACATAATTTGTTAGGTTCTTCCATTTGTTGTAGTAGTTATACAACTGCTGATAGAACTTGGATTGTTGATTCTGGTGCTAGTGATCACATGTGTGCATTTCGTTATCTTTTCTGTCATATTGAACCTCTCAAAATACCTTTTCATATTTCTTTGCCTAATGGTCAATTTATCATTGTGTCTGAAGTTGGCCATATCAAACTTACTCCTGATATTCTATTACAACATGTTCTTCTTGTACCCCACTTCAAATATAATCTGCTCTCAGTTCACAAATTATGTCAACAACTCAATTGTACTGTGTCATTTACTAAGACTCAATGTATCTTACAGGGCCTTTCTCTGAAGAGGCCTCAGGCTCTTGGTAATGTACATGGAGGACTATATCTCTTTCACATGCCATCTGACTTAAAGCAACATATTGTTCCAGTTATGTCTCCTGTCTGTACTGAAAATAATTCACCTTCTGTTTGTGATACTGTCAATGTAGTTCCCTCTGTACCTGCTGTTACATCTTGTAATTCTTGTACTGAGAAGTTTGTTCATGACAATAATACAATGCTTGTTCATAATTCTGCCTGTCATGTTGATTCTGATGTACACTGTAATGCTTCTATGAAGGATACTTTTATTCTTTGGCATAACAGACTTGGTCACCTACCTTATTACAAACTTAAAACTCTTCCTTTTCTTCATGGTTCCTTTGATTCCTCTCTTCTTCCTTGTGATATTTGTCCTAAAGCCAGACAGCACCATTTGCCTTTTCCTTCAAGCTCAATTAAAACATCTTCCCCTTTTGATCTTATTCACATCGATTTGTGGGGACCTTATCATGCCAAGACTTATAATGGATACTCTTACTTTCTTACTATTGTTGATGATTTTACAAGAAACACTTGGACTCATTTACTTCAAACAAAGAGCAATGCATGGGGTCTTATTGTTGCTTTTATCCAGTTAATTGCTACTCAATTCAATGCTACTATCAAAGTCATAAGATCAGATAATGCTTTAGAACTTGGCTCAAGCAAGGCTGCTATCCAATTTTTCAAGGATAAAGGGATTTTACACCAAACCAGTCTTAGAGCTACTCCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_184916.p1 GENE.S_Transcript_184916~~S_Transcript_184916.p1 ORF type:complete len:742 (+),score=132.17,UBN2_3|PF14244.2|2.2e-39,UBN2_3|PF14244.2|3.2e+03,rve|PF00665.22|1.9e+03,rve|PF00665.22|1e-10,Retrotrans_gag|PF03732.13|3e-08,gag_pre-integrs|PF13976.2|3.5e-07 S_Transcript_184916:1683-3908(+)
MSSETTSVIDPSNPLYLHPSDNLGMILITKPFDGNGFGSWKKAFTIALSAKNKLGFVTGKVVKPDSTDKNLNQWQCCNDMITSWILNVLSRDIAESVIYSDSAQDIWNELDDRYGQSNGPKLYQLQKDLCSMSQEGIDIASYFTKFKSICDELTALSTIPSCTCGSAIQFLKIQQDQRLVQFLMGLNDDYNVARGNILMMKPLPSISTAYGLLISDEKQKEIHAASHILPESSALAVKSGHKFQSSSYNTPNYNHQSGFRKSIICNHCKKPGHTANKCYRLIGFPKDFKFTKNSRMAANVYSEDSESIPISEHFSPDQSQQSQHHTLTSEQYQQFLALINNTSIHSPPAVSANTVIGHDSSGISSAVNFAGKIVSTSHNLLGSSICCSSYTTADRTWIVDSGASDHMCAFRYLFCHIEPLKIPFHISLPNGQFIIVSEVGHIKLTPDILLQHVLLVPHFKYNLLSVHKLCQQLNCTVSFTKTQCILQGLSLKRPQALGNVHGGLYLFHMPSDLKQHIVPVMSPVCTENNSPSVCDTVNVVPSVPAVTSCNSCTEKFVHDNNTMLVHNSACHVDSDVHCNASMKDTFILWHNRLGHLPYYKLKTLPFLHGSFDSSLLPCDICPKARQHHLPFPSSSIKTSSPFDLIHIDLWGPYHAKTYNGYSYFLTIVDDFTRNTWTHLLQTKSNAWGLIVAFIQLIATQFNATIKVIRSDNALELGSSKAAIQFFKDKGILHQTSLRATP*

Click here to download the sequence:
Link to NCBI Protein BLAST