Transcript Information: S_Transcript_184917.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23242795838586
Replicate 20.86709653282809
Replicate 30.56375175801399
Condition 2: 8 Hour
Replicate 10.37249590073595
Replicate 20.68385563527549
Replicate 30.46541151975942
Condition 3: 24 Hour
Replicate 10.85853253893165
Replicate 20.8907174855333
Replicate 31.7622389104011


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_184917.p1 GENE.S_Transcript_184917~~S_Transcript_184917.p1 ORF type:complete len:229 (+),score=44.14,UBN2_3|PF14244.2|9e-42,Retrotrans_gag|PF03732.13|1.9e-09 S_Transcript_184917:1702-2388(+)
ATGTCTACAGAAACTGCTCTTGTCATTGATCCTTCAAATCCTTTATATCTTCATCCTTTAGACGATCCTGGAATGATACTTATCACTAAGCCTTTTGATGGAAATGGATTTGGATCGTGGAAGAAAGCGTTCACAATTGCTTTGTCAGCTAAAAACAAATTAGGTTTTGTTACTGGAAAGGTTGATAAGCCTATTTCTACTGATCCAAAGTTCAATCAATGGCAACGTTGCAATGATATGATTACTTCCTGGATTTTAAATGTACTTTCTCGTGATATTGCTGAAAGTGTCATCTATTCAGATTCTACTCAGGACATATGGAATGAACTTGATGATAGGTATGGTCAATCTAATGGACCTAAATTGTATCAACTTCAAAAGGATCTCTGCTCAATGTCACAGGAAGGTATTGATATTGCCAGTTACTTCACTAAATTCAAATCAATATGTGATGAATTGAATGCTCTTTCAACCATTCCTTCATGTACTTGTGGTTCTGCAACTCAATTCCTTAAAATTCAACAAGATCAGAGACTTGTTCAGTTCTTAATGGGACTTAATGATGACTATAATGTTGCTCGTGGTAATATTTTGATGATGAAGCCTCTGCCATCTATTTCTACTACTTATGGAGATGATGAAGCCCCTACCATCTATATCAACTGCATATGGTTTGTTAATTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_184917.p1 GENE.S_Transcript_184917~~S_Transcript_184917.p1 ORF type:complete len:229 (+),score=44.14,UBN2_3|PF14244.2|9e-42,Retrotrans_gag|PF03732.13|1.9e-09 S_Transcript_184917:1702-2388(+)
MSTETALVIDPSNPLYLHPLDDPGMILITKPFDGNGFGSWKKAFTIALSAKNKLGFVTGKVDKPISTDPKFNQWQRCNDMITSWILNVLSRDIAESVIYSDSTQDIWNELDDRYGQSNGPKLYQLQKDLCSMSQEGIDIASYFTKFKSICDELNALSTIPSCTCGSATQFLKIQQDQRLVQFLMGLNDDYNVARGNILMMKPLPSISTTYGDDEAPTIYINCIWFVNF*

Click here to download the sequence:
Link to NCBI Protein BLAST