Transcript Information: S_Transcript_184918.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.49435915607146
Replicate 20.68305850023266
Replicate 30.74227730367433
Condition 2: 8 Hour
Replicate 11.65057200597
Replicate 21.1774657178804
Replicate 31.8478134146733
Condition 3: 24 Hour
Replicate 10.54104974589707
Replicate 22.1751645785349
Replicate 30.93704189740369


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_184918.p1 GENE.S_Transcript_184918~~S_Transcript_184918.p1 ORF type:complete len:323 (+),score=68.95,UBN2_3|PF14244.2|1.9e-40,Retrotrans_gag|PF03732.13|3.5e-09,UBN2|PF14223.2|0.0001,UBN2|PF14223.2|66 S_Transcript_184918:1683-2651(+)
ATGTCTTCAGAGACTACTTCTGTTATTGATCCTTCAAATCCTCTTTACCTTCATCCTTCTGATAATCTTGGAATGATTCTTATTACCAAGCCGTTTGATGGCAATGGCTTTGGTTCATGGAAGAAAGCTTTCACTATCGCTTTATCAGCCAAAAACAAGCTAGGATTTGTTACTGGAAAGGTTGTTAAGCCTGATTCTACAGATAAAAACCTCAATCAATGGCAATGCTGCAATGATATGATTACCTCCTGGATTCTGAATGTTCTTTCTCGAGACATTGCAGAAAGTGTGATTTATTCAGATTCTGCTCAGGACATCTGGAATGAACTGGATGATAGATATGGCCAATCCAATGGACCTAAGTTGTATCAACTTCAGAAAGATCTTTGTTCTATGTCTCAAGAAGGTATTGATATTGCCAGCTACTTTACTAAATTCAAATCAATTTGTGATGAATTGAATGCTCTTTCGACTATTCCTACATGTACTTGTGGTTCTGCAAGTCAATTTCTCAAACTTCAGCAAGATCAAAGACTTGTTCAGTTCTTGATGGGACTCAATGATGATTATAATGCTGCATGTGGTAATATCTTAATGATGAAGCCTCTCCCTTCTCTTTCTACTGCCTATGGTTTGTTGATATCTGATGAAAAACAAAAAGAAATTCATGCTACTTCACATATTATTCCTGAATCTTCTGCAATGATTGTTAAGTCTGGCAACAAATATCAATCTTCATATGGTGCTCCTTCTTACAATCAACAAGCTGGTTACAGAAAACCACTCATATGTAATCATTGTAAGAAACCTGGACATATAGCAAGCAAATGTTATCGATTGATTGGCTTTCCAAAGGATTTCAAGTTCACCAAGAATTCAAGGATGGCTGCAAATGTCTATTCTGAAGATGAGTCTTCTATTCCTATTTCTGAGAATATTTCTTCAATTACTCCAGATCAGCCTATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_184918.p1 GENE.S_Transcript_184918~~S_Transcript_184918.p1 ORF type:complete len:323 (+),score=68.95,UBN2_3|PF14244.2|1.9e-40,Retrotrans_gag|PF03732.13|3.5e-09,UBN2|PF14223.2|0.0001,UBN2|PF14223.2|66 S_Transcript_184918:1683-2651(+)
MSSETTSVIDPSNPLYLHPSDNLGMILITKPFDGNGFGSWKKAFTIALSAKNKLGFVTGKVVKPDSTDKNLNQWQCCNDMITSWILNVLSRDIAESVIYSDSAQDIWNELDDRYGQSNGPKLYQLQKDLCSMSQEGIDIASYFTKFKSICDELNALSTIPTCTCGSASQFLKLQQDQRLVQFLMGLNDDYNAACGNILMMKPLPSLSTAYGLLISDEKQKEIHATSHIIPESSAMIVKSGNKYQSSYGAPSYNQQAGYRKPLICNHCKKPGHIASKCYRLIGFPKDFKFTKNSRMAANVYSEDESSIPISENISSITPDQPI*

Click here to download the sequence:
Link to NCBI Protein BLAST