Transcript Information: S_Transcript_184921.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54091465925164
Replicate 22.3318395467292
Replicate 30.44982283130733
Condition 2: 8 Hour
Replicate 10.95357436377424
Replicate 20.54565484487138
Replicate 31.2997468051818
Condition 3: 24 Hour
Replicate 10.4440016969633
Replicate 20.92129315351006
Replicate 30.82022908634524


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_184921.p1 GENE.S_Transcript_184921~~S_Transcript_184921.p1 ORF type:3prime_partial len:246 (+),score=55.70,UBN2_3|PF14244.2|1.2e-43,Retrotrans_gag|PF03732.13|3.5e-10,UBN2|PF14223.2|1.5e-05,UBN2|PF14223.2|55 S_Transcript_184921:1700-2434(+)
ATGTCAACAGAGAATTCTTCCACGATTGATCCTTCTAATCCTCTATACTTGCGTCCTTCTGATAATCCTGGTATGATTCTCATTACTAAACCTTTTGATGGAAACGGATTTGGCTCATGGAAGAAAGCTTTCACCATAGCTCTGTCAGCTAAGAACAAGATTGGATTTGTAACTGGAAAGGTTCCTAAGCCTGATTCTACTGATAAGAACTTCAACCAATGGCAAAGATGCAATGATATGATCACTTCATGGATACTGAATGTTCTTTCCAGAGACATAGCTGAGAGTGTAATATACTCAAATTCTGCTCAAGATATTTGGAATGAGCTTGATGATAGGTATGGACAATCTAATGGACCTAAGTTGTATCAGCTTCAAAAGGATCTCTCATCTATGTCACAAGAAGGTATAGATATTGCAAGTTATTTCACAAAATTCAAATCAATCTGCGATGAATTGAATGCTCTTTCCACTGTCCCTCCCTGTACATGTGGTTCTGCTTCTCAGTTTCTTAAAATTCAACAAGATCAAAGACTTGTTCAATTCTTGATGGGACTTAATGATGACTATAATGTTGCTCGTGGTAATATTCTCATGATGAAACCTCTACCTTCCCTTTCTACTGCTTATGGACTGTTGATTTCTGATGAAAAACAAAAAGAAATTCATGCTACATCTCATATTCTTCCTGAATCTTCTGCAATGGCTGTAAAACCTGGACACAAGCTTCAATCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_184921.p1 GENE.S_Transcript_184921~~S_Transcript_184921.p1 ORF type:3prime_partial len:246 (+),score=55.70,UBN2_3|PF14244.2|1.2e-43,Retrotrans_gag|PF03732.13|3.5e-10,UBN2|PF14223.2|1.5e-05,UBN2|PF14223.2|55 S_Transcript_184921:1700-2434(+)
MSTENSSTIDPSNPLYLRPSDNPGMILITKPFDGNGFGSWKKAFTIALSAKNKIGFVTGKVPKPDSTDKNFNQWQRCNDMITSWILNVLSRDIAESVIYSNSAQDIWNELDDRYGQSNGPKLYQLQKDLSSMSQEGIDIASYFTKFKSICDELNALSTVPPCTCGSASQFLKIQQDQRLVQFLMGLNDDYNVARGNILMMKPLPSLSTAYGLLISDEKQKEIHATSHILPESSAMAVKPGHKLQS

Click here to download the sequence:
Link to NCBI Protein BLAST