Transcript Information: S_Transcript_184926.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.2811232524843
Replicate 20.23305763617093
Replicate 30.12987842312395
Condition 2: 8 Hour
Replicate 10.82598342777628
Replicate 20.63019291942892
Replicate 30.37527900712995
Condition 3: 24 Hour
Replicate 10.07691860384012
Replicate 20.47881292062706
Replicate 30.26643004653292


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_184926.p1 GENE.S_Transcript_184926~~S_Transcript_184926.p1 ORF type:5prime_partial len:284 (+),score=42.06,UBN2_3|PF14244.2|1.2e-31,Retrotrans_gag|PF03732.13|3e-07 S_Transcript_184926:1-852(+)
CTTTCAGCTAAGAATAAACTAAGTTTTGTTAATGACAAAGTTCCTAAACCTGATTTGACTGATAAGAACTTTAGTCAATGGCAGAGATTTAATGATATGATCACCTCTTGGATTCTTAATGTTCTTTCTCGTGATATTGCTGAAAGTGTGATCTATGCTGATTCTGCTCAAGAAATTTGGAATGAACTTGATGACAGATATGGTCAATCTAATGGACCTAAGCTCTATCAATTTCAGAAAGATCTATGCTCCATGTTACAAGAAGGTATAGACATAGCCAGTTATTTCACTAAATTCAAGTCAATTTGTGATGAATTGACAGCTCTTTCAACTATTCCTACTTGTACATGTGGTTCTGCTGCTCAATTTCTAAAAATTCAACAAGATCAGAGACTTGTTCAGTTCTTAATGGGACTCAATAATGATTATAATGTTGCTCGTGGCAACATTCTGATGATGAAACCATTACCTTCTATTTCTATTGCTTATGGTTTGCTCATTTATGATGAAAAGCAAAAAGAAATTCATGCTCATTCTCATATTGCTCCTGAGTCTTCTGCAATGGCAGCAAGGCCTTCTGGAAAGTATAATCAGTCACCTTCTTATGGCACTTCCAACTTTAATCAGCGTAACAATTTTAGAAAATCTTCTATCATTTGTAACCATTGCAAGAAGCCAGGTCTCACAGTCAACAGATTCCAAAAGATTTCAAGTTCACTAAGAACACAAGAATGGCTGCTAATGTTTACTCTGAGGATAGTTCTTCTTTTCTTGATAATTCCCATTCTGAGAATTATAATTCAGATCATGTTCCTCAGTCTTCTGTTGATAATACTAAGTCTCACACTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_184926.p1 GENE.S_Transcript_184926~~S_Transcript_184926.p1 ORF type:5prime_partial len:284 (+),score=42.06,UBN2_3|PF14244.2|1.2e-31,Retrotrans_gag|PF03732.13|3e-07 S_Transcript_184926:1-852(+)
LSAKNKLSFVNDKVPKPDLTDKNFSQWQRFNDMITSWILNVLSRDIAESVIYADSAQEIWNELDDRYGQSNGPKLYQFQKDLCSMLQEGIDIASYFTKFKSICDELTALSTIPTCTCGSAAQFLKIQQDQRLVQFLMGLNNDYNVARGNILMMKPLPSISIAYGLLIYDEKQKEIHAHSHIAPESSAMAARPSGKYNQSPSYGTSNFNQRNNFRKSSIICNHCKKPGLTVNRFQKISSSLRTQEWLLMFTLRIVLLFLIIPILRIIIQIMFLSLLLIILSLTL*

Click here to download the sequence:
Link to NCBI Protein BLAST