Transcript Information: S_Transcript_185088.p1


Annotated TAIR IDAT5G41270.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16507797-16508813 | Forward length=258
E-Value2.7E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4190314086864
Replicate 23.6005246847333
Replicate 32.4974538446542
Condition 2: 8 Hour
Replicate 14.8130221201863
Replicate 25.9813623099269
Replicate 35.2549485415058
Condition 3: 24 Hour
Replicate 12.8823110161201
Replicate 22.5182012862608
Replicate 33.1527555506395


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_185088.p1 GENE.S_Transcript_185088~~S_Transcript_185088.p1 ORF type:complete len:288 (+),score=59.97,Rpr2|PF04032.12|2.5e-12,Rpr2|PF04032.12|4.8e+03,Rpr2|PF04032.12|5.8e+03 S_Transcript_185088:564-1427(+)
ATGGGCAAGCGAGGAGGAGGTGCAACAACATCCTCCTCATCTGGGCTTCTTCACACTCACACACAGCTGTCTCTTAGAGAAGAAGCCAGTGGGAGAAAGCAATCCCACAATCCTAAATCCATATTGAAACTCAAGCACCTCCAGAACTTAGCTCAGCGGGCTGCTTCTGTTCCCTCTTTGGGTTCCTTCTATGGCCGCCGTTTTGCTGAGTTTGGCGAGGCTCTGGGGATTTCCCCTGACCATTCTCTCTTTCTTTGCCAGAGATGCGAAACTATTCTTCAACCTGGTTTCAACTGTAGTGTCAGAATTGAAAAAAACCGAAGCAAGAAGAGGCGACGTTGCAGCGAAACTAATTCACCCACACAAAATAATGTGGTTTACAATTGCCACTTCTGTTCGCACAGGAACCTAAAAAGAGGGAGCCGTAAAGGTTACATAAGGGAGATGGCCCCTTCAAAGACTAAAACCTTTCAGAAGCCCAAATTTGAAAATTCTACAGTGCAGAAATGTGAAGATGTGGAGAAAACCAATGTAAACAAAGTTGAAAGTTATGAGACAACTGAATCACCTTCACCTTCACCTGTAAGCAATACTGCTATCTCAATAACAGACAGTGCACCAGCACCATTGGCAAACACAGGTGCAAAATTACTGGATAGTAATAAGAGGAAAAGGAAAAAACAAGGATCAAAGGGATCAAATGATGAATCTCTGGTCAGCTCAGCCCCTGCAGATGCAGAAATGGCCAGTGGTACCTCGAGAAAAAGGAAAAAGTCTTGGACTACTCTTAAAGAGATTGCAGCTAATGAAGAGCATGAGAGGAATCAGAGGTTTAAGAATTTTTCGATTCCATTCCTCTTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_185088.p1 GENE.S_Transcript_185088~~S_Transcript_185088.p1 ORF type:complete len:288 (+),score=59.97,Rpr2|PF04032.12|2.5e-12,Rpr2|PF04032.12|4.8e+03,Rpr2|PF04032.12|5.8e+03 S_Transcript_185088:564-1427(+)
MGKRGGGATTSSSSGLLHTHTQLSLREEASGRKQSHNPKSILKLKHLQNLAQRAASVPSLGSFYGRRFAEFGEALGISPDHSLFLCQRCETILQPGFNCSVRIEKNRSKKRRRCSETNSPTQNNVVYNCHFCSHRNLKRGSRKGYIREMAPSKTKTFQKPKFENSTVQKCEDVEKTNVNKVESYETTESPSPSPVSNTAISITDSAPAPLANTGAKLLDSNKRKRKKQGSKGSNDESLVSSAPADAEMASGTSRKRKKSWTTLKEIAANEEHERNQRFKNFSIPFLL*

Click here to download the sequence:
Link to NCBI Protein BLAST