Transcript Information: S_Transcript_186312.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.25713044671672
Replicate 20.60397330511715
Replicate 30.80185809059133
Condition 2: 8 Hour
Replicate 11.2705949142253
Replicate 21.801276057949
Replicate 31.4073264924384
Condition 3: 24 Hour
Replicate 11.0904853272277
Replicate 20.40145237896912
Replicate 31.0153802095457


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_186312.p1 GENE.S_Transcript_186312~~S_Transcript_186312.p1 ORF type:3prime_partial len:621 (+),score=119.89,UBN2_3|PF14244.2|1.3e-35,gag_pre-integrs|PF13976.2|1.8e-09,Retrotrans_gag|PF03732.13|1.6e-06,Retrotrans_gag|PF03732.13|9.7e+03 S_Transcript_186312:637-2496(+)
ATGTCAGGGAGAAATAGTGTTGCTTACAGTGATTTGCAGAATCTACTTTTCTTACATCCTTCGGATGGACCTTCATCCATTTCAATTGAGGAAAAATTACTTGGAGCTGTGAACTATCGATCCTGGAAGAGGAATATGGAGATTGCTTTAGCCACAAAGCGCACACTAGGATTTGTGATTGGAACTGTGAAAAGAGTTGATGATGATACCACCAAAGCAGAACAATGGGACACATGTAATAGTATGGTAATTGCTTGGCTCCTGAATTCTATGATTGAATCTGTGAGACGTTCTGTGTTGTACATTGATTCTGCTTGTGCTATGTGGTTACACCTGGAGAATAGATTTTCTGTGAGTAATGGCTCTAGAAAGTACAAAATCAATAAAGAGATATATGACCTAAGACAAAATGGAGCTAGTATAAATGATTTTTATACTAAAATGAGGTGTCTGTGGGAGGAATTAGATTCTATGAGTAATCTGCCTAAAATTACTGAATTCACTGATGAAATCAAAACATTCTTGAAAGCCTTGGATAAACAACAAGAAGAACATAGGCTATTTCAATTCCTGAATGGATTGGACAACATTTACAACAATCAGAGAAGCAATCTTTTGTTCATGAATCCCTTGCCATCAGTGGAAATGGCTTGTTCCAATCTTCAACAGGAGGAGACCCAAAGAGACATATTGAATACTAATTCCTCTGAGATTGAATCTTCAGCTCTCTTCAGTAAGGGGGAGAATACATATAAGTGCACTGGTTGTGGTAAATCTGGTCATACTAAGGATAGGTGTTGGTCTGAAAATGGCTATCCTTCTTGGCATCCTCTTGCCAAGAAATTTCCACAAAAATCCAGAGGAAAAGAGAACTTTCAACAGGCTGGCTCAAAGAATATTCAGAGTCAGAACTGGAATAGATATGCTGTGCACAAACCAAAACCTTACAAGCAGTCTGTTAACAATGTTCAAACATCTGATGGTGCTGCTACTGGTGTGTCTGGACCTATTTTTACTCAACAACAACTTGCTCAGATTCTTCAACATCTGCCTCACTTATCTAAGGGTGGTAAACTCTCTTCTGATTCTGATGAAGAATTAGACTCAAGCTTTGCAGGTATGCTCTCTTGTCATAGTGCAGCTACTAATACTAATGATTGGATTCTTGATTCTGGAGCATCTGATCATATGACTGCCACCTTTTCTAATCTTCTTCATGCCAAACCAACTACATCTCACAACAAAATTAATCTACCTAATGGTCAAACATCTACTATCACTCATACTGGTTCTGTTGTGCTTGAAAATGGTTTGCATCTTGATGATGTGTTGTTTGTTCCTTCATTCAAGCATAATTTGCTGTCCATTCAAAAACTCACCACTACAAATCATTGCTATGCCACATTTCATCCTGATTTTTGTTTGATTCAGGATTGTGTTACTCACAAGATTAAAGGTGTGGGCAGATCTTCTGGTGGCCTATACTATCTTGTCAACACCTGTCTTGATCAACTAGATCTCAATAAAGCTTTTTCTTTCCTCAATAATAAATGTCAGTCTCAAACTTCTTGTAATGCTAGACAAGTTGATTCTGTAAATATCTGGCATAACAGATTAGGACATATTCCTATGAATAGACTGAAATTTGTTTTAGGTATTTCTGTTAATCCAGCATATACAGATGCTGTTTGTGTAACTTGTCCTATGGCCAAATTTACCAAACTTCCCTTTTCTGTCTCTGCATCAGTTGCTTCTCATGCTTTTGAGTTGCTTCACATTGATATTTGGGGACCTTATAAGGTTCAAACCAGAAATAAGTTCAGATTCTTTCTTACAATTGTTGATGATTTTTCTAGAGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_186312.p1 GENE.S_Transcript_186312~~S_Transcript_186312.p1 ORF type:3prime_partial len:621 (+),score=119.89,UBN2_3|PF14244.2|1.3e-35,gag_pre-integrs|PF13976.2|1.8e-09,Retrotrans_gag|PF03732.13|1.6e-06,Retrotrans_gag|PF03732.13|9.7e+03 S_Transcript_186312:637-2496(+)
MSGRNSVAYSDLQNLLFLHPSDGPSSISIEEKLLGAVNYRSWKRNMEIALATKRTLGFVIGTVKRVDDDTTKAEQWDTCNSMVIAWLLNSMIESVRRSVLYIDSACAMWLHLENRFSVSNGSRKYKINKEIYDLRQNGASINDFYTKMRCLWEELDSMSNLPKITEFTDEIKTFLKALDKQQEEHRLFQFLNGLDNIYNNQRSNLLFMNPLPSVEMACSNLQQEETQRDILNTNSSEIESSALFSKGENTYKCTGCGKSGHTKDRCWSENGYPSWHPLAKKFPQKSRGKENFQQAGSKNIQSQNWNRYAVHKPKPYKQSVNNVQTSDGAATGVSGPIFTQQQLAQILQHLPHLSKGGKLSSDSDEELDSSFAGMLSCHSAATNTNDWILDSGASDHMTATFSNLLHAKPTTSHNKINLPNGQTSTITHTGSVVLENGLHLDDVLFVPSFKHNLLSIQKLTTTNHCYATFHPDFCLIQDCVTHKIKGVGRSSGGLYYLVNTCLDQLDLNKAFSFLNNKCQSQTSCNARQVDSVNIWHNRLGHIPMNRLKFVLGISVNPAYTDAVCVTCPMAKFTKLPFSVSASVASHAFELLHIDIWGPYKVQTRNKFRFFLTIVDDFSRA

Click here to download the sequence:
Link to NCBI Protein BLAST