Transcript Information: S_Transcript_186313.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5302475710229
Replicate 21.4892382951323
Replicate 30.82992312376203
Condition 2: 8 Hour
Replicate 12.878927692813
Replicate 21.1185924319863
Replicate 31.8118470464234
Condition 3: 24 Hour
Replicate 11.2560808007092
Replicate 21.3598286945808
Replicate 31.2611022202558


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_186313.p1 GENE.S_Transcript_186313~~S_Transcript_186313.p1 ORF type:3prime_partial len:400 (+),score=78.75,UBN2_3|PF14244.2|5.5e-36,Retrotrans_gag|PF03732.13|7.8e-07,Retrotrans_gag|PF03732.13|4.4e+03 S_Transcript_186313:637-1833(+)
ATGTCAGGGAGAAATAGTGTTGCTTACAGTGATTTGCAGAATCTACTTTTCTTACATCCTTCGGATGGACCTTCATCCATTTCAATTGAGGAAAAATTACTTGGAGCTGTGAACTATCGATCCTGGAAGAGGAATATGGAGATTGCTTTAGCCACAAAGCGCACACTAGGATTTGTGATTGGAACTGTGAAAAGAGTTGATGATGATACCACCAAAGCAGAACAATGGGACACATGTAATAGTATGGTAATTGCTTGGCTCCTGAATTCTATGATTGAATCTGTGAGACGTTCTGTGTTGTACATTGATTCTGCTTGTGCTATGTGGTTACACCTGGAGAATAGATTTTCTGTGAGTAATGGCTCTAGAAAGTACAAAATCAATAAAGAGATATATGACCTAAGACAAAATGGAGCTAGTATAAATGATTTTTATACTAAAATGAGGTGTCTGTGGGAGGAATTAGATTCTATGAGTAATCTGCCTAAAATTACTGAATTCACTGATGAAATCAAAACATTCTTGAAAGCCTTGGATAAACAACAAGAAGAACATAGGCTATTTCAATTCCTGAATGGATTGGACAACATTTACAACAATCAGAGAAGCAATCTTTTGTTCATGAATCCCTTGCCATCAGTGGAAATGGCTTGTTCCAATCTTCAACAGGAGGAGACCCAAAGAGACATATTGAATACTAATTCCTCTGAGATTGAATCTTCAGCTCTCTTCAGTAAGGGGGAGAATACATATAAGTGCACTGGTTGTGGTAAATCTGGTCATACTAAGGATAGGTGTTGGTCTGAAAATGGCTATCCTTCTTGGCATCCTCTTGCCAAGAAATTTCCACAAAAATCCAGAGGAAAAGAGAACTTTCAACAGGCTGGCTCAAAGAATATTCAGAGTCAGAACTGGAATAGATATGCTGTGCACAAACCAAAACCTTACAAGCAGTCTGTTAACAATGTTCAAACATCTGATGGTGCTGCTACTGGTGTGTCTGGACCTATTTTTACTCAACAACAACTTGCTCAGATTCTTCAACATCTGCCTCACTTATCTAAGGGTGGTAAACTCTCTTCTGATTCTGATGAAGAATTAGACTCAAGCTTTGCAGGAGTGGAAAAGTCAAAGCCAAGGGGACAATCTACTTGTCTAATATTCGAATGGTGTTTGTGGCAAGTAAGCCTGTGGGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_186313.p1 GENE.S_Transcript_186313~~S_Transcript_186313.p1 ORF type:3prime_partial len:400 (+),score=78.75,UBN2_3|PF14244.2|5.5e-36,Retrotrans_gag|PF03732.13|7.8e-07,Retrotrans_gag|PF03732.13|4.4e+03 S_Transcript_186313:637-1833(+)
MSGRNSVAYSDLQNLLFLHPSDGPSSISIEEKLLGAVNYRSWKRNMEIALATKRTLGFVIGTVKRVDDDTTKAEQWDTCNSMVIAWLLNSMIESVRRSVLYIDSACAMWLHLENRFSVSNGSRKYKINKEIYDLRQNGASINDFYTKMRCLWEELDSMSNLPKITEFTDEIKTFLKALDKQQEEHRLFQFLNGLDNIYNNQRSNLLFMNPLPSVEMACSNLQQEETQRDILNTNSSEIESSALFSKGENTYKCTGCGKSGHTKDRCWSENGYPSWHPLAKKFPQKSRGKENFQQAGSKNIQSQNWNRYAVHKPKPYKQSVNNVQTSDGAATGVSGPIFTQQQLAQILQHLPHLSKGGKLSSDSDEELDSSFAGVEKSKPRGQSTCLIFEWCLWQVSLWG

Click here to download the sequence:
Link to NCBI Protein BLAST