Transcript Information: S_Transcript_186640.p1


Annotated TAIR IDAT2G16940.2
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:7342869-7347052 | Reverse length=610
E-Value2E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.7963197451079
Replicate 28.455782781955
Replicate 37.8808167405694
Condition 2: 8 Hour
Replicate 110.850584060039
Replicate 212.023636713862
Replicate 39.2963388233179
Condition 3: 24 Hour
Replicate 19.4308307580539
Replicate 29.2352536159125
Replicate 36.6110645026626


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_186640.p1 GENE.S_Transcript_186640~~S_Transcript_186640.p1 ORF type:complete len:454 (-),score=119.51,RRM_1|PF00076.18|5e-11,RRM_1|PF00076.18|1.5e-19,RRM_6|PF14259.2|5.9e-06,RRM_6|PF14259.2|1.1e-12,RRM_5|PF13893.2|0.26,RRM_5|PF13893.2|1.9e-06 S_Transcript_186640:69-1430(-)
ATGGATTTTGATGAGTATGAATACTTGGAAAAGACTGTTGAAAATCCCGAGCCCCAGAAATCGAAGGAAGATGCCAATTGTGGGGATGCACCTCTCAAATCAGGGGAAAAGGATAGAAGCCGAAGTTCTTGGCATAGGGGTGAGGATGATGATGTCAATCGAAAACCCAAGCGTTCCAGATCTGGGGATGATCTGATTGATCGTGATCGACGTAGAGATAAGGGTTCTTCTCGGCACCGATCACGGTCCGGAGAAAGGAGTGATAGAGATGGGGAAAGGCATAAAAGTAGCAGAGAAAGAGAACATAGAGATAAGTATAGAGAAAGAGAGGAGAGGAATGGGAGGGACCGTGATCGGGAACGGGAACGGGAACGTGATCGTGAAAGGAAAGAACGTGACCATGAGAAGGAAGTCGAGAGAGACAGGGATGAACGTGAACACCGTAGCAGGAGTCGTTCAGATAGACATCGGGATGATAGGGAGAGGAGGCGAGACAGGGAAGTTAGGGGAAAGAGCAGAGACAGGGAAGTAAGGGAGATGAGCCGGGAAAGGGAATACAGAGAAAGGAGTCGGGATAGGGAGCGCAGAGAAAGGAGTCGAGACATCGAGCTACGTGACAAAGAAAGCCGACGGCACAAGGAAAAGAAGGAAGAAGCAGCAGAGCCAGAGGCTGATCCTGAACGGGATCAAAGAACAGTTTTTGCTTATCAGCTCCCTCTGAGGGCAGATGAAAGAGATATTTTCGAATTTTTCTCTAGAGCAGGCAAGGTGCGGGATGTACGGCTCATAATGGATAGGAATTCAAGACGATCCAAGGGTGTGGGGTATATTGAGTTTTACGACGTAATGTCAGTTCCAATGGCTATAGCACTCTCAGGGCAGCCTATTCGTGGTCAACCAGTCATGATTAAACCCTCTGAAGCAGAGAAAAATCTGGTCCAGTCCACATCTACCACAGCTGCAGGAGCTGGTGGTCTCACAGGTTCAGGGGCAGCAAGGAGACTCTATGTTGGCAATTTAGTTCCTAATATTACCGAAGAGCAACTTCGTGTGGTCTTTGAACCATTTGGGACTATAGAGCTGGTGCAGTTACCTCGTGATGAGACAGGCCTTTGTAAAGGATTTGCATTTGTCCAGTTTGCACGTCTTGAAGATGCTAAAGCAGCTCAGAATCTAAATGGACAATTGGATATTGGTGGTCGGTTTATTAAGGTATCAGCTGTCACTGATCAACCTGGGATGCAAGATGCTGGGGCAGCTACTGGTGATTTAGATGATGATGAAGGTGGCGGCATGGTTAGTATCCAACTTCTTCATATTTTCTTTCTTTCATATGGGGCTAAGCATTTTCTGAAGCTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_186640.p1 GENE.S_Transcript_186640~~S_Transcript_186640.p1 ORF type:complete len:454 (-),score=119.51,RRM_1|PF00076.18|5e-11,RRM_1|PF00076.18|1.5e-19,RRM_6|PF14259.2|5.9e-06,RRM_6|PF14259.2|1.1e-12,RRM_5|PF13893.2|0.26,RRM_5|PF13893.2|1.9e-06 S_Transcript_186640:69-1430(-)
MDFDEYEYLEKTVENPEPQKSKEDANCGDAPLKSGEKDRSRSSWHRGEDDDVNRKPKRSRSGDDLIDRDRRRDKGSSRHRSRSGERSDRDGERHKSSREREHRDKYREREERNGRDRDRERERERDRERKERDHEKEVERDRDEREHRSRSRSDRHRDDRERRRDREVRGKSRDREVREMSREREYRERSRDRERRERSRDIELRDKESRRHKEKKEEAAEPEADPERDQRTVFAYQLPLRADERDIFEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPIRGQPVMIKPSEAEKNLVQSTSTTAAGAGGLTGSGAARRLYVGNLVPNITEEQLRVVFEPFGTIELVQLPRDETGLCKGFAFVQFARLEDAKAAQNLNGQLDIGGRFIKVSAVTDQPGMQDAGAATGDLDDDEGGGMVSIQLLHIFFLSYGAKHFLKL*

Click here to download the sequence:
Link to NCBI Protein BLAST