Transcript Information: S_Transcript_186840.p1


Annotated TAIR IDAT3G47530.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17517382-17519157 | Reverse length=591
E-Value8.3E-228
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.98871831214293
Replicate 20.85382312529082
Replicate 30.71372817660993
Condition 2: 8 Hour
Replicate 12.3768236885969
Replicate 22.181774712543
Replicate 32.573740113295
Condition 3: 24 Hour
Replicate 10.6086809641342
Replicate 21.0875822892674
Replicate 30.85895507262005


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_186840.p1 GENE.S_Transcript_186840~~S_Transcript_186840.p1 ORF type:5prime_partial len:646 (+),score=103.47,DYW_deaminase|PF14432.2|1.7e+03,DYW_deaminase|PF14432.2|2.9e-35,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|0.4,PPR_2|PF13041.2|2e-06,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|5.1e-09,PPR_2|PF13041.2|0.065,PPR_2|PF13041.2|0.096,PPR_2|PF13041.2|47,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|0.0071,PPR|PF01535.16|0.0025,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.00059,PPR|PF01535.16|7.3e-07,PPR|PF01535.16|0.055,PPR|PF01535.16|0.63,PPR|PF01535.16|5.4e+02,PPR|PF01535.16|0.16,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|5.4e+02,PPR_3|PF13812.2|2,PPR_3|PF13812.2|28,PPR_3|PF13812.2|21,PPR_3|PF13812.2|35,PPR_1|PF12854.3|3.4e+02,PPR_1|PF12854.3|3.4e+02,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|7.9e+02,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|0.082,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|1.4e+03 S_Transcript_186840:3-1940(+)
AAGCTCCATTCCTGTGAGTCTATGACACCGAGGTGGTATTTACGCCATTCTTCTTCCTTTCCCTTCACCAATTCCTTCTTCTTCAACCACTACTACTACCTCTACAGCCGTTGCTTCACCTCAGTTTCTCTTTATCTCTTACAAGACAACCCTCCGCAAATCTCCTCAAACTTCCAAAACCCTTTATACCCCAACCCCACATCACAATACCAAAAGAGAGAACACCTTTTTTCTCTTCTGAAATCATGTTCTTCAAAACCCCATTTTCTTCAACTTCATGCCCAGTTCATCCGTTCCAATTTGATCCAGCACCCTCGTTTATCGCTCAAGTTCCTCACAAAAGCTGCAACTTTTTCCCCTCAAAATATGACTTATCTCTCTAATATTTTCTCTCAGTTAATGGCACCTAATGTTCCTCATTATAATGTCATAATAATGGCTAGTGATTGCGCTTCTTATGGGCTTAAGTTTTTCAACAGGATGAGACAAGATGGGTTCTTTCCTGACCCATTAACCTTGTCCTTTTGTTTAAAGTCTTTTGTTAAGATTTCTGGGTTGCTTGAGGGGAAACAACTGCATGTTAGGCTTTTGGCTGGTCGGTATACAAAAGATCCCATCTTGATGAATTCTTTGATGAATTTGTACTCTGTTTGTGGCAAATGTGGGGATGCATATAAGATGTTTGATGAATTGCCTCAAAGAGATACTGTTGATTGTAATGCAATGATCTCTTGTCTTATGCAGAATAAGAGAACTAGAGATGCTTTGACTGTATTTGATACTATGGAAAGCAGCTTTGGGACACATTGTAGGCCTGATGATGTTACTTGCTTGTTGTTGATTCAGGTTTGTGGTGATTTGGGTGCTTTAGATTTTGGTAGGAAGGTTAGAGATTATGTTGAGGAACATGGGTATGGGAAGTTTTTGAAGATTAATAATGCTTTCATTACCATGTATTCGAAATGTGGGTATGTGGATGAAGCATATGAAATCTTCAAGAGGATTGAGAATAAAAACTTGGTGTCTTGGAGTGCAATGCTATCAGGTTTTGCGATGAATGGGTATGGACATGATGCCATTGAAATGTTTTGGGAGATGCAGAGGATGGGGTTTAGTCCAGATGATAAGGCTTTTACCGGGGTTTTGTATGCCTGCAGTCATAGTGGCTTGCTCGAGGAGGGGTTGGCGTTTTTTGATATGATGATAAAGGAGTTCAGAGTAAAACCAAATTCCTATCATTATGGGTGTGTGGTTGATATACTAGGACGTGCTGGTTTACTTAGTCGAGCGTATGATCTCATAAGGTCCATGGAACCTAAGCCAAATGCAAAAACTTGGAGGACCTTGCTCGCATCTTGCAGAATATACAGGAATTTTGAACTTGCAGAAAGAATTATTGAGCATATAGTGGAGCTTAAGGCCCAAGAGGCAGGAGATTATGTTCTATTGTTGAACACTTACTCTGTAAATGGCAAATGGGATAAAGTAACAGAATTGAGAAAGTTCATGAAGGAAAACAGCATCTTAACAAAGCCTGGCTGTAGTACAATTGAACTCAAAGGAGTGGTGCACCAATTTGTTGCTGATGATATGTCTCATCCGCGCAAGGATGAAATATACAAGACGCTTGGAGAAATCAAGCAGCAACTGAAAATAGCTGGATATGTCCCTGAAACATCATCAGAGTTGCATAACTTACACACAGATGAGAAGGGCTTGGCACTCTCCTATCATAGTGAAAAACTGGCTATTGCTTTTGGGGTCCTTGCAACTCCTCCTGGCACAACTATCAGAGTAGCCAACAGCATTCGAACTTGTGCTGATTGCCATCGCTTTGCTATAGTGTTTTCGACTGTGTACAACCGGAAGGTAATAATACGTGATCGCAATAGGTTGCATCATTTTAGAGAAGGAAACTGCTCCTGTGGTGATTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_186840.p1 GENE.S_Transcript_186840~~S_Transcript_186840.p1 ORF type:5prime_partial len:646 (+),score=103.47,DYW_deaminase|PF14432.2|1.7e+03,DYW_deaminase|PF14432.2|2.9e-35,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|0.4,PPR_2|PF13041.2|2e-06,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|5.1e-09,PPR_2|PF13041.2|0.065,PPR_2|PF13041.2|0.096,PPR_2|PF13041.2|47,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|0.0071,PPR|PF01535.16|0.0025,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.00059,PPR|PF01535.16|7.3e-07,PPR|PF01535.16|0.055,PPR|PF01535.16|0.63,PPR|PF01535.16|5.4e+02,PPR|PF01535.16|0.16,PPR_3|PF13812.2|3.9e+03,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|5.4e+02,PPR_3|PF13812.2|2,PPR_3|PF13812.2|28,PPR_3|PF13812.2|21,PPR_3|PF13812.2|35,PPR_1|PF12854.3|3.4e+02,PPR_1|PF12854.3|3.4e+02,PPR_1|PF12854.3|0.016,PPR_1|PF12854.3|7.9e+02,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|0.082,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|1.4e+03 S_Transcript_186840:3-1940(+)
KLHSCESMTPRWYLRHSSSFPFTNSFFFNHYYYLYSRCFTSVSLYLLQDNPPQISSNFQNPLYPNPTSQYQKREHLFSLLKSCSSKPHFLQLHAQFIRSNLIQHPRLSLKFLTKAATFSPQNMTYLSNIFSQLMAPNVPHYNVIIMASDCASYGLKFFNRMRQDGFFPDPLTLSFCLKSFVKISGLLEGKQLHVRLLAGRYTKDPILMNSLMNLYSVCGKCGDAYKMFDELPQRDTVDCNAMISCLMQNKRTRDALTVFDTMESSFGTHCRPDDVTCLLLIQVCGDLGALDFGRKVRDYVEEHGYGKFLKINNAFITMYSKCGYVDEAYEIFKRIENKNLVSWSAMLSGFAMNGYGHDAIEMFWEMQRMGFSPDDKAFTGVLYACSHSGLLEEGLAFFDMMIKEFRVKPNSYHYGCVVDILGRAGLLSRAYDLIRSMEPKPNAKTWRTLLASCRIYRNFELAERIIEHIVELKAQEAGDYVLLLNTYSVNGKWDKVTELRKFMKENSILTKPGCSTIELKGVVHQFVADDMSHPRKDEIYKTLGEIKQQLKIAGYVPETSSELHNLHTDEKGLALSYHSEKLAIAFGVLATPPGTTIRVANSIRTCADCHRFAIVFSTVYNRKVIIRDRNRLHHFREGNCSCGDF*

Click here to download the sequence:
Link to NCBI Protein BLAST