Transcript Information: S_Transcript_186976.p1


Annotated TAIR IDAT1G18485.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:6363172-6366084 | Forward length=970
E-Value1E-126
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.52852923013793
Replicate 20.85055146658643
Replicate 30.6679028254575
Condition 2: 8 Hour
Replicate 12.4165453980863
Replicate 21.9862856268916
Replicate 32.216250510331
Condition 3: 24 Hour
Replicate 10.45935502667137
Replicate 20.71486321560909
Replicate 30.67769511836176


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_186976.p1 GENE.S_Transcript_186976~~S_Transcript_186976.p1 ORF type:5prime_partial len:856 (+),score=149.60,PPR_2|PF13041.2|3.6e-07,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|43,PPR_2|PF13041.2|8.2e-08,PPR_2|PF13041.2|0.044,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|3.2,PPR_2|PF13041.2|0.0041,PPR_2|PF13041.2|0.0026,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|1.5e-05,PPR_2|PF13041.2|0.35,PPR_2|PF13041.2|2.4,PPR|PF01535.16|2.3e+02,PPR|PF01535.16|0.14,PPR|PF01535.16|23,PPR|PF01535.16|0.00017,PPR|PF01535.16|8.8,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|0.00054,PPR|PF01535.16|0.12,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|0.026,PPR|PF01535.16|0.0049,PPR|PF01535.16|0.00038,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.54,PPR_3|PF13812.2|32,PPR_3|PF13812.2|0.75,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|9.4e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|6.1,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|6.6,PPR_3|PF13812.2|7.8e+02,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|24,PPR_3|PF13812.2|0.99,PPR_1|PF12854.3|21,PPR_1|PF12854.3|7.8e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|3.7e+03,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|0.0085,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|0.076,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|6.6,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|27 S_Transcript_186976:1-2568(+)
TTTAACTTGTCCATTGAAGCTTACACATCCGTTTTTCTGAAAGAGTACATTGTTGTTCTAGTACCCCTTCTGGTTTCCCTCCAAAAACCATTCAACACAAAAATTCCAACCCCATCAACCTCTTCTATGTTCAATCATGCTCGTATTCATCTCCCTCTAGTCTCTTCCCTCTTCTCAAATCCAAACCCCTTACTATTCTTCTCAACAACATCCATTAAATCATTTCATGTCTCTAAAAAAGTCCCTGACTTTCTCCCTCTCCTATCTTCCCTACAATCCCTCCAACAAAACAAGCAAGCCCATGCTCTCACTCTCACTTCCGGTCCCCTCCCTTCAAGTGTCTTAATTTGTGCTTCTCTCATTCTTAACTATGCCAAATTTGGTGACCCAAGTGCCTGTCTTTTTCTCTTCCAAAACTCTCTGCCCTTTTGTAAAACACCCTTTTTGTGGAATACCCTTTTGCGGGGTTACTCCAAAGCTGGGATCTTTGATGCTTTTCAGGTGTATAATTCCATGATTAGGGATGGTACTATGAGGCCTGATGATCATACTTTCCCTTCTGTGATCAAAGCTTGTGCTGATAATTTGTTTGGTATGAAGGGTAAAGAGGTTCATGGGTTTGTGATTAAGGTGGGTTTTGATTGGGATGTGTATGTGGGAAATACCCTTTTGTATTTTTATAGTTGTTGCTCTGATTTAGGGAGTGCACAGAAGGTGTTTGACGTAATGCCTGAGAGAGATGTTGTGTCTTGGAATTCTATGATTGGGGCGTTGGTTGCTAATAGGTGTGCTGAGGACGCGGTTGAGAGGTTTGTTGAGATGATGGGGTCTGGTTTTTTGCCGAACGTGGTTAGTGTAGTCAGTGTGTTGCCTGCGTGTGGAGCGCTCAAGGATGAGTTGATGGTGAGGGTGATTCATGGTTATGTCGTCAAGGTTGGGCTGTTTTGTCTAGTGGTGGTTGGGAATGCTTTGGTTGATGTGTATGACAAGTTTGGAGAGCTTGAGAGGTCACGGCAAGTTTTTGAAGAAATAAAAGAGAAGAACACTGTGTCTTGGAATGCTATTATTACTGGCTTGGCTCATGCCGGATGCTATGGCGATGCATTGAGGATGTTTAGGTTGATGATTGATTCAAAGGTAAAACTGGATGGTGTTACTATATCTAGTGTGTTTCCGGTTCTGGTTGAACTGGAATGTTTCACTGAAGGAAGAGAAATTCATGGACTTAGTATTAGGAGGGAACTTGATTCAGACCTCTTCATTGCTAATTCACTGATTGACATGTATGCGAAATCAGGGCATTCGGTTAAGGCCTCTAGCATCTTTCACAAGATGAGTGTTAGAAATGTGGTAACATGGAATGCCATGGTTGCTAATTTTGCTCAAAATAACCATGAATTGGCTGCAATCAAACTCGTGAGTCAAATGCAAGCTCTTGGAGAAACTCCTAATGCAGTAACCTTCACAAATGTTTTACCAGCCTGTGCCCGAGTGGGGGCTATCGGCTCAGGCAAAGAAATACATGCCAAATGCTTACAAAGTGGAGCTTCCGTTGATATATTTATTTCAAATGCACTAATAGACATGTATGCTAAGTGTGGTTTCCTTGATCTGGCACGAAGTGTATTTGACACCTCCTCTAGAGACCAAATATCATACAACACGCTTATAGTGGGCTATTCACAAATGAGTGAATGCCCGAAGTCCTTGTACTTGTTGAAAGAGATGGGACTCATGGGTGTAGAGCAGGATACAGTTTCCTTTGTTGGTGCTATTTCAGCTTGTGCCAATTTTGCTGCGTTGAAGGCAGGGAAGGAGATTCATGGGTTTATCATAAGACGGTTGTTTCACACACATTCTTTTGTTTGCAATTCACTCTTGGATCTCTATATGAAGTGTGGAAAAGTTGATAAAGCTCAAAAAATATTCGAACAGATTCACCAGAAAGATACAGCCTCATGGAATACAATGATTTTAGGTTATGCAATGCTTGGTGAGTTTGAGATAGCAATCAATCTCTTTGAAGCCATGAGGGAAGATGTTGTGGATCATGACTCTGTTTCATTTATAGCAGTTCTATCAGCGTGTAGTCATGGGGGACTAGTTGAGAAGGGTAAGAAATACTTTGAAGAGATGCAGGCTAAAGGCGTAATACCATCACATATGCACTACACTTGCATGGTTGATCTTCTTGGTCGAGCAGGCCTGATGGAAGAGGCTGTAAAGCTTATCAAAGACCTTCCATTTGAAACCGATGCCAACATTTGGGGGGCTTTACTAGGGGCCAGCCGAATCCATGGGGATATAGAGGTAGCAAAATGGGCAGCTGAGCATCTCTTTGTGCTAAAGCCAGAGCATTCAGGATACTATGTTCTCCTTTCGAACATGCTTGCAGAAGCCGGAAGGTGGGATGAAGCAACAAGGGTTAGAGAACTCATGAAGTCCAAGGGTGCTAAGAAAGATCCTGCATATAGTTGGGTTCAGGTTCGTGATCAGGTTCATGCGTTTCTGGTCGGTGAATCTGCTGATGTCTCGGAGCTAGGTTCATCTCAGGCATATCCTGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_186976.p1 GENE.S_Transcript_186976~~S_Transcript_186976.p1 ORF type:5prime_partial len:856 (+),score=149.60,PPR_2|PF13041.2|3.6e-07,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|43,PPR_2|PF13041.2|8.2e-08,PPR_2|PF13041.2|0.044,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|3.2,PPR_2|PF13041.2|0.0041,PPR_2|PF13041.2|0.0026,PPR_2|PF13041.2|1.6e-06,PPR_2|PF13041.2|1.5e-05,PPR_2|PF13041.2|0.35,PPR_2|PF13041.2|2.4,PPR|PF01535.16|2.3e+02,PPR|PF01535.16|0.14,PPR|PF01535.16|23,PPR|PF01535.16|0.00017,PPR|PF01535.16|8.8,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|0.00054,PPR|PF01535.16|0.12,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|0.026,PPR|PF01535.16|0.0049,PPR|PF01535.16|0.00038,PPR|PF01535.16|4.1e-05,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.0023,PPR|PF01535.16|0.54,PPR_3|PF13812.2|32,PPR_3|PF13812.2|0.75,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|9.4e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|6.1,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|4.7e+03,PPR_3|PF13812.2|6.6,PPR_3|PF13812.2|7.8e+02,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|24,PPR_3|PF13812.2|0.99,PPR_1|PF12854.3|21,PPR_1|PF12854.3|7.8e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|3.7e+03,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|0.0085,PPR_1|PF12854.3|2.5,PPR_1|PF12854.3|0.076,PPR_1|PF12854.3|4.1e+02,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|6.6,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|27 S_Transcript_186976:1-2568(+)
FNLSIEAYTSVFLKEYIVVLVPLLVSLQKPFNTKIPTPSTSSMFNHARIHLPLVSSLFSNPNPLLFFSTTSIKSFHVSKKVPDFLPLLSSLQSLQQNKQAHALTLTSGPLPSSVLICASLILNYAKFGDPSACLFLFQNSLPFCKTPFLWNTLLRGYSKAGIFDAFQVYNSMIRDGTMRPDDHTFPSVIKACADNLFGMKGKEVHGFVIKVGFDWDVYVGNTLLYFYSCCSDLGSAQKVFDVMPERDVVSWNSMIGALVANRCAEDAVERFVEMMGSGFLPNVVSVVSVLPACGALKDELMVRVIHGYVVKVGLFCLVVVGNALVDVYDKFGELERSRQVFEEIKEKNTVSWNAIITGLAHAGCYGDALRMFRLMIDSKVKLDGVTISSVFPVLVELECFTEGREIHGLSIRRELDSDLFIANSLIDMYAKSGHSVKASSIFHKMSVRNVVTWNAMVANFAQNNHELAAIKLVSQMQALGETPNAVTFTNVLPACARVGAIGSGKEIHAKCLQSGASVDIFISNALIDMYAKCGFLDLARSVFDTSSRDQISYNTLIVGYSQMSECPKSLYLLKEMGLMGVEQDTVSFVGAISACANFAALKAGKEIHGFIIRRLFHTHSFVCNSLLDLYMKCGKVDKAQKIFEQIHQKDTASWNTMILGYAMLGEFEIAINLFEAMREDVVDHDSVSFIAVLSACSHGGLVEKGKKYFEEMQAKGVIPSHMHYTCMVDLLGRAGLMEEAVKLIKDLPFETDANIWGALLGASRIHGDIEVAKWAAEHLFVLKPEHSGYYVLLSNMLAEAGRWDEATRVRELMKSKGAKKDPAYSWVQVRDQVHAFLVGESADVSELGSSQAYPA*

Click here to download the sequence:
Link to NCBI Protein BLAST