Transcript Information: S_Transcript_187159.p1


Annotated TAIR IDAT1G60590.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22314426-22316867 | Reverse length=540
E-Value2.7E-255
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1510508517157
Replicate 21.2441422682809
Replicate 30.832003131591
Condition 2: 8 Hour
Replicate 10.64136512231979
Replicate 21.3036227590818
Replicate 31.4424257777807
Condition 3: 24 Hour
Replicate 10.49274173287055
Replicate 21.7892482823432
Replicate 32.1334436056959


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_187159.p1 GENE.S_Transcript_187159~~S_Transcript_187159.p1 ORF type:complete len:532 (+),score=56.65,Glyco_hydro_28|PF00295.13|2.9e-08,Glyco_hydro_28|PF00295.13|4.1e-71,Pectate_lyase_3|PF12708.3|1.7e-05,Pectate_lyase_3|PF12708.3|1.2e+03 S_Transcript_187159:235-1830(+)
ATGAAGGCATCTCACGTAAGAAGTTTCACATTAATGCTTCTCACTGTTGTACTTCTTTGGTCTACAAGTTTTGATACGTGCATTGCTAGAAGAGGAAGGCATTGGAGGCACAACAGACCTCTCTCAGCCTCACAACTTAAGAAGAAAGGAAACAATAAGCACCATAGTAGTAAACCCAAGACAAAGGGTTCATACCACAAAGCTCCAGGTCATGCACCAGTTGCATCACCCCCACCAACGAAGAAAGCTCCTTATCCTAAAGGGTCGTCTCCTAAAACCAAGCCGCCTTCCAGTCCGGCACCAATTGAAGAAATTCCAACACCTGAACCACAAGGTAGCAGTGTTTTCAGTGTGATTGATTATGGAGCTAAGGGTGATGGAAGATCAGATGATACTAAGGCATTCCAAGATGCATGGGCAGCAGCTTGTAAAGTGGAGTCATCAACGATGCTAATTCCATCAGGATATCAATTTCTTGTGGGACCAATTTCATTTTCTGGTCCTTACTGCCAGAAAAACATTGTATTCCAGCTTGATGGGACGATCATCGCTCCAACAAGCCCCAATACATGGGGTCATGGTCTATTGTGGTGGCTAGATTTCACAAAATTGGTAGGGACCACAATACAAGGAAAGGGAGTCATTGATGGAAGTGGCTCGGTCTGGTGGCAAGCTGATCCGTATGGGGCTCCTGTGGATGATGAAACACAAATGATTGTCCCATTAAATGGCAGAGTGCTAAGACGCCCCCCAATACCAGAAACAAGTGAGCTGAGTGTGAAAATGCCAAGTATCAAGCCAACGGCACTGAGGTTCTACAGCAGTATTAACGTGACAGTCACAGGCATAACAATTCAAAACAGTCCTCAATGTCATCTAAAGTTCGACAATTGCAATGGAGTCTTGGTGTATTCGATGAGTGTTTCATCACCCAGCAACAGTCCCAATACTGATGGAATCCACCTACAGAACTCCAAAGATGTGCTAATTCACACTACAAATCTTGCTTGTGGTGATGACTGTATTTCCATACAAACTGGATGCTCAAACGTATACATCCACGGCGTGAATTGTGGACCTGGACATGGCATCAGTATTGGAAGTCTTGGAAAGGATAACACTAAGGCATGTGTCTCAAATGTCACTGTTCGAGACGTCAATATACAGGGAACAATGACTGGAGTCCGCATAAAGACATGGCAGGGTGGCTCAGGCTCTGTGCAAGGTATAACGTTTTCAAATATTCAAGTCAGTGAAGTTCAGCTTCCTATCGTAATAGACCAGTATTATTGCGATAAAAGAACGTGCAAGAATCAAACAACAGCTGTTTCGGTATCAGATATCACATATCAAAATATAAAAGGTTCATACACAGTGAAACCAGTACACCTGGCTTGTAGTGATAACCTTCCATGCACAGACATAACCTTAAACCGCATTCAACTACAGCCACAGCAAGGACCATATCGGATATCAGAACCCTATTGCTGGCAAAGTTTTGGAGAGCTTACGACTCCTATTGTCCCTCCTATTGGTTGTTTTCAGATAGGAAAGCCATTGAAGAACAAGGTTCAGTCGGATGCTGATTTATGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_187159.p1 GENE.S_Transcript_187159~~S_Transcript_187159.p1 ORF type:complete len:532 (+),score=56.65,Glyco_hydro_28|PF00295.13|2.9e-08,Glyco_hydro_28|PF00295.13|4.1e-71,Pectate_lyase_3|PF12708.3|1.7e-05,Pectate_lyase_3|PF12708.3|1.2e+03 S_Transcript_187159:235-1830(+)
MKASHVRSFTLMLLTVVLLWSTSFDTCIARRGRHWRHNRPLSASQLKKKGNNKHHSSKPKTKGSYHKAPGHAPVASPPPTKKAPYPKGSSPKTKPPSSPAPIEEIPTPEPQGSSVFSVIDYGAKGDGRSDDTKAFQDAWAAACKVESSTMLIPSGYQFLVGPISFSGPYCQKNIVFQLDGTIIAPTSPNTWGHGLLWWLDFTKLVGTTIQGKGVIDGSGSVWWQADPYGAPVDDETQMIVPLNGRVLRRPPIPETSELSVKMPSIKPTALRFYSSINVTVTGITIQNSPQCHLKFDNCNGVLVYSMSVSSPSNSPNTDGIHLQNSKDVLIHTTNLACGDDCISIQTGCSNVYIHGVNCGPGHGISIGSLGKDNTKACVSNVTVRDVNIQGTMTGVRIKTWQGGSGSVQGITFSNIQVSEVQLPIVIDQYYCDKRTCKNQTTAVSVSDITYQNIKGSYTVKPVHLACSDNLPCTDITLNRIQLQPQQGPYRISEPYCWQSFGELTTPIVPPIGCFQIGKPLKNKVQSDADLC*

Click here to download the sequence:
Link to NCBI Protein BLAST