Transcript Information: S_Transcript_1880.p1


Annotated TAIR IDAT1G01060.1
Annotated Gene NameHomeodomain-like superfamily protein
Annotated Gene Symbol(s)LHY, LHY1
Annotation TypeOrtholog
Chromosome Positionchr1:33992-37061 | Reverse length=645
E-Value3.6E-156
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1481.69532235677
Replicate 2475.81088993024
Replicate 3489.4054168563
Condition 2: 8 Hour
Replicate 18.7607008870384
Replicate 28.4347915817348
Replicate 37.9502350526687
Condition 3: 24 Hour
Replicate 1605.10327268946
Replicate 2528.6793451769
Replicate 3485.115348673


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_1880.p1 GENE.S_Transcript_1880~~S_Transcript_1880.p1 ORF type:complete len:740 (+),score=200.39,Myb_DNA-binding|PF00249.27|3.4e-13 S_Transcript_1880:1030-3249(+)
ATGGACGCTGCTTACTCTTCCGGTGAAGAGCTAGTTATCAAGACGAGAAAACCTTATACAATTACCAAGCAACGAGAGAGATGGACAGAGGAGGAGCACAATAGGTTTTTGGAGGCCTTGAAACTATATGGACGAGCTTGGCAGCGGATAGAAGAACATATTGGGACAAAGACCGCTGTCCAGATCAGAAGTCATGCGCAGAAGTTCTTTTCAAAGTTGGAAAAGGAGGCTCTTGTTAAGGGTGTTCCAGTGGGGCAAGCAATCGACATAGAAATTCCCCCTCCACGTCCTAAAAGGAAACCAAGCAATCCTTACCCCCGCAAGACTGGTGTTACAAGTTCCCTGAATACACAGGTCAGAGGAAAGGACGGGAAGCAAGCACCTGCAGGTTCTTCACATAGTGCAAGCCAAGTTTTAGACTTGGAGAAAGAACCACCACCTGAGAAAACTGCTTGTGATGATGAGAGAAAAGATGCCAAGGGAGCCTCTGGCGATGATAAGAGCTCAGAAACCTTTTCCCTGTTCCAAGAAGCACCCTCCACTATCACAGCAGCCACTATTGAGAACTCTGCCACAACCACAGAAGCAACAGGAAAGTCCTGCAACTTAAGTGAACCTGCACCAATTAAACCGCAGGATGTCAATATTGAAAGATGTGATTCTCGTGCGGCTGATAGATCAAATAAAAATCATAAGCCAGAAAAACCCGGTGTTGCGGACACTGCTCAGAATGACACAGAAAATCAAATGCATGCTGCTAAGAACTTTCCTAGGCATGCTCCTGTTCAGATTCTTGATGGAAGCCCAGGAGCTTGCAGTCAGGCTTTTTCCTCAGATGTTTCATATCAAGAATCTGCATTTCATCATATGGGGATCCCAGGGCATCCTGTATTATTTGGAAATCCAGGAGTTTCAGCTCCTGTGGAAAGTCAAAATAGCACATCAAGATCCACTAATCACCATATGTTTCCAAGTTTCCATCCTCCATTTACTGCATATCCTAACACCCAAGAAGACTACTCTTCATTTCTGCAGATGTCCTCCACCTTTTCAAGCCTGATTGTGTCTGCTCTTCTCCAGAATCCAGCTGCACATGCTGCAGCAAGTTTTGCAGCTTCCTTTTGGCCCTGCACGAATATTGAAAATTCAGCTAACCCTCCTGCTGGTTTAAATGGGGGATTCCCACCACGACCCATGAATACAGCTCCAAGCATGGCAGCAATCGCTGCAGCCACAGTAGCAGCTGCTACTGCCTGGTGGGCAGCACATGGACTCCTGCCCTTGTGTGCTCCACTGCATGCTGGCTTCACTTGTCCTCCTCCCTCTGCTACTGCTCCAGTAACTAATTCTGCGCAAACACAAGCACCTAATGAAGAAAGAGAAGAGAACAATTTCCAAAACCCGGAATCACAGGATCAACAAGCAGATCAGGAACTCTCTGAAGCTTTACAGCCACAGCATTCAGCATCCAAATCTCCAGCAACGTCGTCGTCTGATTCGGGGAACAGTTCAGGTGCAAAGATGGAAGTTGGGATAACAGCCAATAATGATGAGAAAAAGGTCTCTGTAGTGACTGAGCAAAAGGAACTAAGCAAGGGGAAAAACAAGAAACAGGTAGATCGCTCGTCTTGTGGATCCAACACACCTTCAGGAAGTGATGTTGAGACTGATGCTCTGCAGAAGGATGATGAAGCTAAGGAAGAATCCATGGGACCTAATAATATTCCTCCTGTTTGTGAAACTAATCGTCGAAATCGAATTGCCAGCAACTTAAATGAAAGCTGGAAGGAGGTTTCAGAGGGGGGGCGCCTGGCATTTCAAGCACTTTTCTCTAGAGAGGTACTGCCCCAGAGCTTTTCACCAACACATGATGTTAGTAATCTGGACCAGGAGATGAATGACGGTGTTGAGGAAAATAGGCAAGGTGCAGTAGAAAGCAATGAAGAGGCATCACAATTGGACCTTAATAGCAATACATGGGAATCTTGTTCGGGTGACCAAGGCTTAGAGAAAAATGGATTAAGAGAGGAGGAGAATGGAAAAGATCAACTCCTGACAATTGGTCTTGCTCAAGGGAAGCTAAGAGCTCGCAGAACAGGTTTTAAGCCATATAAGAGGTGCTCTGTGGAGGCCAGCAGGGAGAGCAGGGTGAACTCCAGCAGTCAAGAGCAGGAAAAATGTGCCAAGAGATTACGCTTGGAAGGGGAGGCTTCAACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_1880.p1 GENE.S_Transcript_1880~~S_Transcript_1880.p1 ORF type:complete len:740 (+),score=200.39,Myb_DNA-binding|PF00249.27|3.4e-13 S_Transcript_1880:1030-3249(+)
MDAAYSSGEELVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPVGQAIDIEIPPPRPKRKPSNPYPRKTGVTSSLNTQVRGKDGKQAPAGSSHSASQVLDLEKEPPPEKTACDDERKDAKGASGDDKSSETFSLFQEAPSTITAATIENSATTTEATGKSCNLSEPAPIKPQDVNIERCDSRAADRSNKNHKPEKPGVADTAQNDTENQMHAAKNFPRHAPVQILDGSPGACSQAFSSDVSYQESAFHHMGIPGHPVLFGNPGVSAPVESQNSTSRSTNHHMFPSFHPPFTAYPNTQEDYSSFLQMSSTFSSLIVSALLQNPAAHAAASFAASFWPCTNIENSANPPAGLNGGFPPRPMNTAPSMAAIAAATVAAATAWWAAHGLLPLCAPLHAGFTCPPPSATAPVTNSAQTQAPNEEREENNFQNPESQDQQADQELSEALQPQHSASKSPATSSSDSGNSSGAKMEVGITANNDEKKVSVVTEQKELSKGKNKKQVDRSSCGSNTPSGSDVETDALQKDDEAKEESMGPNNIPPVCETNRRNRIASNLNESWKEVSEGGRLAFQALFSREVLPQSFSPTHDVSNLDQEMNDGVEENRQGAVESNEEASQLDLNSNTWESCSGDQGLEKNGLREEENGKDQLLTIGLAQGKLRARRTGFKPYKRCSVEASRESRVNSSSQEQEKCAKRLRLEGEAST*

Click here to download the sequence:
Link to NCBI Protein BLAST