Transcript Information: S_Transcript_18800.p1


Annotated TAIR IDAT4G13650.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:7939611-7942898 | Reverse length=1064
E-Value5E-126
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.079414900941
Replicate 218.216982203453
Replicate 323.712089250344
Condition 2: 8 Hour
Replicate 122.946455374005
Replicate 223.251475715994
Replicate 323.187619281959
Condition 3: 24 Hour
Replicate 118.55240432753
Replicate 220.436045038699
Replicate 323.007264621181


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_18800.p1 GENE.S_Transcript_18800~~S_Transcript_18800.p1 ORF type:complete len:763 (+),score=123.18,PPR_2|PF13041.2|0.00039,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|7.9e+02,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|0.099,PPR_2|PF13041.2|5.4e-05,PPR_2|PF13041.2|6.2,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.001,PPR|PF01535.16|6e+02,PPR|PF01535.16|26,PPR|PF01535.16|0.00015,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.0024,PPR|PF01535.16|13,PPR|PF01535.16|91,PPR|PF01535.16|0.017,PPR|PF01535.16|2e-08,PPR|PF01535.16|0.00068,PPR|PF01535.16|0.11,PPR|PF01535.16|22,PPR|PF01535.16|35,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|6e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.00052,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|0.0075,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.99,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.085,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|64,PPR_3|PF13812.2|6.8,PPR_1|PF12854.3|0.0062,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|46,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|13,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|0.75,PPR_1|PF12854.3|0.00048,PPR_1|PF12854.3|0.98,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|1.4e+03,DYW_deaminase|PF14432.2|3.3e-26,TPR_14|PF13428.2|4e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|11,TPR_14|PF13428.2|5.5e+02,TPR_14|PF13428.2|63,TPR_14|PF13428.2|67,RPN7|PF10602.5|7.1,RPN7|PF10602.5|0.65,RPN7|PF10602.5|1.5e+02,RPN7|PF10602.5|51,RPN7|PF10602.5|2.5e+03,RPN7|PF10602.5|1.7e+03 S_Transcript_18800:188-2476(+)
ATGGCTTCTCTCCCTTCAATTGCCTTAAATGGCAATCTCAAACTGGAACCTGATCTTAGAAGGATCCCCTCCCATGAAAAGAGTCAAAGTGTTAGTTATCCAAAAACCCAAACCATAACTCACCTTGATGCAACCTTGGAGAGAAGCTTCTTTGACTTCACAGAGGCATTGTCTACCTTAAATGAAGGTACCCAAGTTGAATCCCTATTCTATGTTCCTTTATTGAAAGAATGTGTTGACAAGAAATCGGTGTCAAATGCTCGAATGATTCATGCCCACATTTTCAAAACTGGTACACATGAAGATGCATTTGTTATGACTAGCCTTGTAAATGTTTATGCTAAATGTGGGCATATGGAATCTGCCCAAAAGGTGTTTGACCAAATGTCTAGGAGAAATGTTGTTAGTTGGACAGGACTTATGACAGGATATGTTCATAATTCGCGGCCTGAGGTAGCTATCCAGGTGTTCCTACAAATGTTGGAAGTGGGGGCTTATCCTTCGAGTTACACGTTTGGGACGATATTAAGTGCTTGTTCATCTATTTCACTTGTCGATTTAGGGAAACAAATCCATGCCTACATTATCAAATATGGGATAGAATCTGACACGAGTATTGGCAATGCACTTTGTAGCTTTTACTCTAAGTGTGGGAGCTTGGGCTCTGCTGTTGATGCATTTCGAAGAATAGAAGAAAAGAATGTGATATCATGGACGGCAGTTATTTCTGCTTGTAGTGATAATGGGGATCCTGAAGTGGGTTTAAGGTATTTCATTGAGATGCTTTCGGAAGATGTGGAGCTCAATGAGTTCACATTTACTACTGTCTTGAGTTTGTGTTGTGGAGTGCATGCTTTGGATGTAGGGAGACAAATACAATCCATGAGCATCAAACTTGGATTCATAGGGAACCTACCAATCAAAAACTCCATAATGTATCTATACTTGAAATGTGGATTGATTAATGAAGCGCATAGACTATTTGATGAGATGGAGACTATCAACTTGGTGACATGGAATGCAGTAATAGCAGGCCATGCCCAGATGATGGATCTCGCAGAAGGTGGTATTTCTGCCCATAAAAGTGGAAGCGAGGCCTTAGATATGTATGTAAAGATGAACCGATCAGGCATGAAACCAGATCTATTCACCTTGTCGAGTGTCTTGAGCGTATGCAGCGGACTTGTGGCCTTGGAACAAGGTGAACAAGTTCATGCTCAGACCATTAAAACTGGGTTCTTGGCAGATGTGATTGTGGGTACTGCCTTGGTTAACATGTACAGTAAATGTGGAAATATAGATAGGGCCAGTAAAGCTTTCTTGGAGATGCAGACTAGGACTATGATATCCTGGTCATCTATGATTTCAGCCTTTGCACAACATGGTCAACCTCAAAAAGCATTACAGCTATTTGAGGAAATGCGTTTGGCTGGAGAGAAACCTAATAAGATCACGTTTATTGCTGTTCTTTCAGCTTGCAGCCATGGGGGGATGGTTGATGAGGCATTAGGATACTTCGAAATGATGAAGAAAACTTACAAGATTAAGCCAATAATGGAGCACTATGCATGCCTGGTAGATATGTATGTACGTCTTGGGCGTTTAGAGCAAGCTTTTGATCTTACCAAGAAAATGGGCTGTGAACCCAACGATGTTGTTTGGTCAATCTTGATTGCTGGTTGCAGAAGTCAAGGAAATTTGGAGCTGGGTTTTCATGCAGCCGAACAATTACTCAAATTGAAGCCCAGAGATAAGGAGACCTATGTTATGTTGTTAAACATGTATCTCACAGCCGAAAGATGGCAAGACGTTTCAAGAGTCAGAAAAATGATGAAGGATGAGAAGCTTGGGAAGTTGCAAGACTGGAGCTGGTTAAGCATCAAGGACAAAGTTTACTCGTTCGCACCACATAGCCAATCATATCCTCTTAGAACAGAGGTTGAAAATTACCTGGGAGTGTTGCTTGATGAAGCCATTAGTAAGGGATATAGATCTCAAACCCAACAAGCAACTGATGGGGAGGATGATGATGCAGATGAAGACAAGCCAGTATCATTATCCAGTTTTCATCACAGTGAAAAGCTAGCGGTTGCATTTGGATTGTTACATACACAAAAACCCGTGCCTATACGAGTTGTTAAGAGTATGAGCATGTGTAGGGACTGTCATGCATTCATCAAGCTCCTCTCTGAAATGATTGGTAGGGAAATTATAATTCGTGACAGTAAGCGACTTCACAGATTTGTCGATGGACATTGTTCCTGTGGAGATTTTGGCAATCTTCTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_18800.p1 GENE.S_Transcript_18800~~S_Transcript_18800.p1 ORF type:complete len:763 (+),score=123.18,PPR_2|PF13041.2|0.00039,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|7.9e+02,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|0.099,PPR_2|PF13041.2|5.4e-05,PPR_2|PF13041.2|6.2,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.001,PPR|PF01535.16|6e+02,PPR|PF01535.16|26,PPR|PF01535.16|0.00015,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.0024,PPR|PF01535.16|13,PPR|PF01535.16|91,PPR|PF01535.16|0.017,PPR|PF01535.16|2e-08,PPR|PF01535.16|0.00068,PPR|PF01535.16|0.11,PPR|PF01535.16|22,PPR|PF01535.16|35,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|6e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.00052,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|0.0075,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.99,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.085,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|64,PPR_3|PF13812.2|6.8,PPR_1|PF12854.3|0.0062,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|46,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|13,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|0.75,PPR_1|PF12854.3|0.00048,PPR_1|PF12854.3|0.98,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|1.4e+03,DYW_deaminase|PF14432.2|3.3e-26,TPR_14|PF13428.2|4e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|11,TPR_14|PF13428.2|5.5e+02,TPR_14|PF13428.2|63,TPR_14|PF13428.2|67,RPN7|PF10602.5|7.1,RPN7|PF10602.5|0.65,RPN7|PF10602.5|1.5e+02,RPN7|PF10602.5|51,RPN7|PF10602.5|2.5e+03,RPN7|PF10602.5|1.7e+03 S_Transcript_18800:188-2476(+)
MASLPSIALNGNLKLEPDLRRIPSHEKSQSVSYPKTQTITHLDATLERSFFDFTEALSTLNEGTQVESLFYVPLLKECVDKKSVSNARMIHAHIFKTGTHEDAFVMTSLVNVYAKCGHMESAQKVFDQMSRRNVVSWTGLMTGYVHNSRPEVAIQVFLQMLEVGAYPSSYTFGTILSACSSISLVDLGKQIHAYIIKYGIESDTSIGNALCSFYSKCGSLGSAVDAFRRIEEKNVISWTAVISACSDNGDPEVGLRYFIEMLSEDVELNEFTFTTVLSLCCGVHALDVGRQIQSMSIKLGFIGNLPIKNSIMYLYLKCGLINEAHRLFDEMETINLVTWNAVIAGHAQMMDLAEGGISAHKSGSEALDMYVKMNRSGMKPDLFTLSSVLSVCSGLVALEQGEQVHAQTIKTGFLADVIVGTALVNMYSKCGNIDRASKAFLEMQTRTMISWSSMISAFAQHGQPQKALQLFEEMRLAGEKPNKITFIAVLSACSHGGMVDEALGYFEMMKKTYKIKPIMEHYACLVDMYVRLGRLEQAFDLTKKMGCEPNDVVWSILIAGCRSQGNLELGFHAAEQLLKLKPRDKETYVMLLNMYLTAERWQDVSRVRKMMKDEKLGKLQDWSWLSIKDKVYSFAPHSQSYPLRTEVENYLGVLLDEAISKGYRSQTQQATDGEDDDADEDKPVSLSSFHHSEKLAVAFGLLHTQKPVPIRVVKSMSMCRDCHAFIKLLSEMIGREIIIRDSKRLHRFVDGHCSCGDFGNLL*

Click here to download the sequence:
Link to NCBI Protein BLAST