Transcript Information: S_Transcript_188001.p1


Annotated TAIR IDAT5G49665.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20167119-20169420 | Reverse length=740
E-Value2.6E-236
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3090239631044
Replicate 21.7510150442472
Replicate 30.92701583488998
Condition 2: 8 Hour
Replicate 11.9463649892621
Replicate 21.4796196190295
Replicate 31.6353428056732
Condition 3: 24 Hour
Replicate 10.54901162211811
Replicate 20.83940042875361
Replicate 31.3344997039744


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_188001.p1 GENE.S_Transcript_188001~~S_Transcript_188001.p1 ORF type:complete len:756 (+),score=82.63,VWA|PF00092.24|3.9e-14,VWA_2|PF13519.2|2.9e-13,VWA_3|PF13768.2|7.1e+03,VWA_3|PF13768.2|1.6e-11,zf-RING_11|PF17123.1|1.1e-09,zf-RING_2|PF13639.2|1e-06,zf-C3HC4|PF00097.21|1.2e-05 S_Transcript_188001:306-2573(+)
ATGGGAACTGGTTGGAGAAGAGCATTTTGCACAACAATCCCAAAAGAAAGAGAAACAGATAAAAATCGCCGTCACCACCAACACCAAGAAGCAGTAGAACAACAACAGCCGAGTCCCAGCCCAAGAAGCTGTGCCAAATTGAGTTTCTTTTCAAGTGCTAGCAATCCAACCACTCCAAGAGTACAACAAACTAGTGCTAGTCAGCCTTCAACCCCCACCTTAAGATGCCGGACTTTTCCAGACCGCCATTCGGGTTTGAACCCGGGCCCCAAGCTCCATTGCAACACCAAAAGTCCCAAGATCAAGCTAAGTTCCAACCCTTCCTCGCCTCGCTCCCCCTTCTCTATCCTCAAGAACACCCTCCGCCTCTCTAGGAATGGGTGCGGAGTGTGTATGCAGAGCGTGAAGACAGGGCAGGGGATGGCCATATACACAGCAGAGTGTTCACATGCCTTCCATTTCCCCTGCATAGCATCCCATGTGAGGAAACAGGGCAACCTGATCTGCCCTGTTTGCAATGTCACTTGGAAGGACGTTCCTCTCCTTTCATTCCACAAAAACAACCCTTCCGAGTCTGAGCAGATCATCGAGAAAAGACCCATCTCCACCGCCATCGCCGCCAGTGCTCCGGCCACCCCTACGGGTTTAAACCGGATCCACTTCGAGGACAAGCGGATCCAGTCCTCGATCTCCTCCGTCAAAATAACAAAAAAGTCTTCATCGTCAGAAAGATCCTACAACGACGACGAGCCACTGCTGTCACCAACCTCGGCCTCGAGGTTCAACCCGATACCTGAGGCCGAGGAAGAAACAGAGGACAATGAGGAGTTTCAAGGGTTCTGTGTAACTCCAAACCCTCCAACGACACCTAAGAAAATGAGCGTAGATCCTTACGCTACAAATGACAAGAAGGCACACCGTAATGTGGAGGTGAAGCTTCTACCTGAAGCTGCTGTTGTTTCGGCTAGCCGCTCTTATGAGACTTACGCGGTGGCGCTGAGGGTGAAAGCGCCACCTGCTACGGCGGACATACTTTCACCATCCCGCCGTGCTCCGGTTGATCTGGTGACGGTTCTTGACGTCAGTGGGAGTATGACTGGAGCTAAGCTACAGATGCTAAAAAGAGCTATGAGGTTGGTTATTTCTTCGCTCGGCTCGGCTGATCGGCTTAGTATTGTGGCTTTCTCGGCTTCTCCTCAGAGATTGTTGCCTTTGAAGAGAATGACGGCTCAAGGTCAGAAAACGGCTCGGAAAATCGTTGACCAGCTTGGGTGTGGTCAAGGGACTTGTGTTTGTGAAGCCTTGAGGAAAGCCGCCAAGGTGTTGGAAGACCGCAGGGAAAAAAACCCGGTTGCTAGTATTATGCTTTTATCTGACGGTCAAGATGACCGGGTTGGTGGGGGGACTAATAACTCGAGTCAAAAGCAGTCCGGTTCAAAGGCACAGGCCCGGTTTTCTCATATTGAGATCCCGGTTCATTCATCGGGGTACGGGTTCCCAACTCAATTGCCGGCTGAGGATGCTTTCTCGAAGTGCGTTGGCGGTTTGCTTAGCGTGGTGGTTCAGGATTTGAGGGTTCAGCTCGGGTTCGCTTCCGGTTCAGCTCCGGCTGAGATCATGGCGGTTTATAGTTGTAACTCCCGGCCTACTTTAATGAGCTGCGACTCGGTCCGGCTTGGAGACTTGTATGCTGAAGAAGAGAGGGAGTTGTTGATTGAGCTGAAGGTGCCCACGTCAGCAATGGGGTCCCACCACGTGATGTCTGTTCGTTGTAGTTACAAGGATCCAGTTAGCCAAGAGCTGATGATTGGGCGTGAGAGGGCCCTACTGGTCCCTCGGCCCCACGCCGTTCGATCATCTGACCCCAGGATCGAACGCCTCAGGAACCTCTTCATCTACACACGAGCCGTAGCCGAGTCACGCCGCCTCGTCGACCACGGCGACTTCACCAGCGCCCACCACTTGCTCTCCTCGGCTCGAGCTCTCGTGATGCAGTCCTCGGCTGGCTCAGCCGAGGACTATGCTCGGGGGCTCGAGGCAGAGCTGGCGCAAGTCCATTGGCGGAGGCAGTACCAAGCTCAAGTCCAAAGGCAGAAAGATCTATCAGTGACTCCAACGGCTCAGCCGCTAGTCGATGAGAACGGGGAGCCGCTCACACCGACCTCGGCTTGGCGAGCCGCAGAGCAGCTGGCTAAAGTGGCTATGATGAAGAAGTCATTGAACCGCTCAACTAGCGATCTACACGGCTTTGAAAATGCTAGATTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_188001.p1 GENE.S_Transcript_188001~~S_Transcript_188001.p1 ORF type:complete len:756 (+),score=82.63,VWA|PF00092.24|3.9e-14,VWA_2|PF13519.2|2.9e-13,VWA_3|PF13768.2|7.1e+03,VWA_3|PF13768.2|1.6e-11,zf-RING_11|PF17123.1|1.1e-09,zf-RING_2|PF13639.2|1e-06,zf-C3HC4|PF00097.21|1.2e-05 S_Transcript_188001:306-2573(+)
MGTGWRRAFCTTIPKERETDKNRRHHQHQEAVEQQQPSPSPRSCAKLSFFSSASNPTTPRVQQTSASQPSTPTLRCRTFPDRHSGLNPGPKLHCNTKSPKIKLSSNPSSPRSPFSILKNTLRLSRNGCGVCMQSVKTGQGMAIYTAECSHAFHFPCIASHVRKQGNLICPVCNVTWKDVPLLSFHKNNPSESEQIIEKRPISTAIAASAPATPTGLNRIHFEDKRIQSSISSVKITKKSSSSERSYNDDEPLLSPTSASRFNPIPEAEEETEDNEEFQGFCVTPNPPTTPKKMSVDPYATNDKKAHRNVEVKLLPEAAVVSASRSYETYAVALRVKAPPATADILSPSRRAPVDLVTVLDVSGSMTGAKLQMLKRAMRLVISSLGSADRLSIVAFSASPQRLLPLKRMTAQGQKTARKIVDQLGCGQGTCVCEALRKAAKVLEDRREKNPVASIMLLSDGQDDRVGGGTNNSSQKQSGSKAQARFSHIEIPVHSSGYGFPTQLPAEDAFSKCVGGLLSVVVQDLRVQLGFASGSAPAEIMAVYSCNSRPTLMSCDSVRLGDLYAEEERELLIELKVPTSAMGSHHVMSVRCSYKDPVSQELMIGRERALLVPRPHAVRSSDPRIERLRNLFIYTRAVAESRRLVDHGDFTSAHHLLSSARALVMQSSAGSAEDYARGLEAELAQVHWRRQYQAQVQRQKDLSVTPTAQPLVDENGEPLTPTSAWRAAEQLAKVAMMKKSLNRSTSDLHGFENARF*

Click here to download the sequence:
Link to NCBI Protein BLAST