Transcript Information: S_Transcript_188178.p2


Annotated TAIR IDAT5G15390.1
Annotated Gene NametRNA/rRNA methyltransferase (SpoU) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4995333-4997255 | Forward length=350
E-Value7.7E-88
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.5106781754543
Replicate 22.7422676286177
Replicate 33.3342799699165
Condition 2: 8 Hour
Replicate 12.1686837610644
Replicate 23.0334710019968
Replicate 34.3354266315216
Condition 3: 24 Hour
Replicate 10.12341742085082
Replicate 23.7132798627914
Replicate 30.99748198212324


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_188178.p2 GENE.S_Transcript_188178~~S_Transcript_188178.p2 ORF type:complete len:177 (+),score=35.24,SpoU_methylase|PF00588.15|2e-24 S_Transcript_188178:580-1110(+)
ATGTCGTTTCTTGCGACAGCTCCAAAAGGTTGGGGAAACAGGTACAGAGATAATCGGCATGTTAGCATGGGTGCAGAGAAGTGGCTGGACATTGAAGTGTGGAACTCCACTAAAGAATGCTTTGATGTTTTGAGATCACGTGGATACAGAATTGCTACAACACATCTAGGAAAAGATTCGGTGTCTATTTATGACATGGATTGGTCTTGTCCAACTGCCATTATTGTTGGGAATGAGAACAAGGGAATTAGTGATGAAGCTTTAGAGTTATCGGATTTGCACTGCAGTATTCCAATGCAGGGCATGGTCGATTCTTTTAATGTTTCAGTTGCTGCTGGGTTGCTTATGCATCATGCTGTTTGTGACAGAACGTCGCGCCTGGGTTCTCATGGTGATCTAACGTCAGAAGAAAGTCAAATTCTTCTTGCTGAATTTTCACTTCGTCACAGCAACAGTGCAATAAGCATTGCTTGTGAGTATGCAAAAGCCCCCCATCCCCGTACCAAAGCTATGATGGATGACATGGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_188178.p2 GENE.S_Transcript_188178~~S_Transcript_188178.p2 ORF type:complete len:177 (+),score=35.24,SpoU_methylase|PF00588.15|2e-24 S_Transcript_188178:580-1110(+)
MSFLATAPKGWGNRYRDNRHVSMGAEKWLDIEVWNSTKECFDVLRSRGYRIATTHLGKDSVSIYDMDWSCPTAIIVGNENKGISDEALELSDLHCSIPMQGMVDSFNVSVAAGLLMHHAVCDRTSRLGSHGDLTSEESQILLAEFSLRHSNSAISIACEYAKAPHPRTKAMMDDMA*

Click here to download the sequence:
Link to NCBI Protein BLAST