Transcript Information: S_Transcript_188299.p1


Annotated TAIR IDAT3G23330.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8347200-8349347 | Forward length=715
E-Value8E-141
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.63597245598777
Replicate 20.48667918141577
Replicate 30.61023759100149
Condition 2: 8 Hour
Replicate 12.3128640233655
Replicate 22.2618596970312
Replicate 32.0375442563585
Condition 3: 24 Hour
Replicate 10.36140432245468
Replicate 20.49993702006649
Replicate 30.6954607832293


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_188299.p1 GENE.S_Transcript_188299~~S_Transcript_188299.p1 ORF type:5prime_partial len:544 (+),score=108.40,PPR|PF01535.16|57,PPR|PF01535.16|0.013,PPR|PF01535.16|0.0032,PPR|PF01535.16|5.9e-06,PPR|PF01535.16|0.021,PPR|PF01535.16|8.5e-08,PPR|PF01535.16|6.1,PPR|PF01535.16|0.0065,PPR|PF01535.16|18,PPR|PF01535.16|2.4,PPR_2|PF13041.2|30,PPR_2|PF13041.2|4.6e-05,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|5.3e-11,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|0.0043,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|1.2e-35,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|28,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|0.72,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|3.6,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|58,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|0.078,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|20,PPR_1|PF12854.3|0.00028,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|0.79 S_Transcript_188299:3-1634(+)
GGCTTCAATGTGGGTTTAGCTACAAAAATCATCGATCTTTATTGCAACTGTAATGCCTTAGTTTATGCACATCACCTGTTCGACAAAATTCCTAAAAGAAATCTCTTCCTCTGGAACGTTCTGATTCGTGGGTATGCTTGGGATGGCCCTTATGAAGTTTCTTTATCACTATATTATCAATTACTTGATTTTGGGCTTACCCCTGATAACTTCACATTCCCATTTGTGCTTAAGGCATGCTCTTCACTTTCTGCTATCAAGGAAGGAAAGGACATTCATGAACATGTGATCCGTACCGGTTGGGACAATGATGTTTTTGTAGGAGCTGCTCTTATTGATATGTATGCTAAATGTGGTTGCTTGGATAGTGCTAGGGAAGTGTTTGATAAGATTGTGTGTAGGGATGTAGTTTTGTGGAACTCTATGCTTGCTGCTTATTCCCAAAATGGGTACCCTGAGGAGGCCCTTTCTTTGTGTAGTCAGATGGCCTTTGCAAGCGAGAGGCCTACAGTTGCTACGCTTGTGACGGTTATTTCGGCTTCGGCTGACATTGCTGCTCTCCCTCAAGGGAGGGAGATTCATGGGTATAGTTGGAGACATGGGTTTGAATCTCAAGATAAGGTTAAAACTGCTCTTGTAGATATGTATGCAAAGTGTGGGCCGGTTAGAGTTGCGAGGGAGTTGTTTGAGAGGCTTCAAGAGAAAAGGGTTGTTTCGTGGAATGCTATGATTACTGGGTATGCCATGCATGGTTATGCCTTTGACGCAATAGATTTGTTTGAGGAGATGAGACGACAAGCTTATCAGCCTGATCATATTACCTTCGTTGGTGTTCTTTCAGCTTGTCGTCATGGTCGCTTGCTAGATGAAGGGTGGAACTATTTTAACGAAATGGCTAATGAATACTGTATAGACCCTACAGTGCAGCATTATACATGCATGGTTGATCTACTTGGTCATACTGGTCGATTGAGGGAGGCTCACAGTCTCATAATGCAAATGAAGGTGATGCCAGATTCTGCTGTCTGGGGTTCATTGTTAAATGCTTGTAAGATCCATGGAAATGTGGAATTGGGGGAATTAGCCTTGGAAAAGCTCATTGAGCTTGAGCCTGATGATTCAGGCAATTATGTTATATTGTCCAACATATATGCACAAGCTGGACAATGGGATGGAGTTGCGAGGGTGAGAAGATTGATGACTGATAGGGGCATCAAGAAAAGTATAGCATGCAGTTGGATTGAAGTGAAAAACGAAGTTCATGCTTTCCTCTCTGGAGACACTTCACATCTCTTGTGTGATGCAATATATGCAGAGTTGGAAAGGGTAACAGGGCTAGTAACAGAAGCTGGGTATGTTCCCACTACTGGGACTGTTTTCCATGATGTTGAAGATGATGAGAAGGCTCGCATGGTCAACAGTCATAGTGAAAGGCTTGCAATTGCTTTTGGACTTATCAGTACCCAACCAGAGACTAGGCTTCTCATCACCAAGAACATCAGAGTTTGTGAGGATTGTCATGTTTTCATTAAATTTGTTTCAGAAGTCACACGAAGGGAGATCACTATAAGAGATGTCAACCGTTACCATCATTTCAAAGAGGGTGCTTGTTCTTGTGGTGATCATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_188299.p1 GENE.S_Transcript_188299~~S_Transcript_188299.p1 ORF type:5prime_partial len:544 (+),score=108.40,PPR|PF01535.16|57,PPR|PF01535.16|0.013,PPR|PF01535.16|0.0032,PPR|PF01535.16|5.9e-06,PPR|PF01535.16|0.021,PPR|PF01535.16|8.5e-08,PPR|PF01535.16|6.1,PPR|PF01535.16|0.0065,PPR|PF01535.16|18,PPR|PF01535.16|2.4,PPR_2|PF13041.2|30,PPR_2|PF13041.2|4.6e-05,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|3.4,PPR_2|PF13041.2|5.3e-11,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|0.0043,PPR_2|PF13041.2|1.5e+02,DYW_deaminase|PF14432.2|1.2e-35,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|28,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|0.72,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|4.8e+03,PPR_3|PF13812.2|3.6,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|58,PPR_1|PF12854.3|1e+03,PPR_1|PF12854.3|0.078,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|20,PPR_1|PF12854.3|0.00028,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|0.79 S_Transcript_188299:3-1634(+)
GFNVGLATKIIDLYCNCNALVYAHHLFDKIPKRNLFLWNVLIRGYAWDGPYEVSLSLYYQLLDFGLTPDNFTFPFVLKACSSLSAIKEGKDIHEHVIRTGWDNDVFVGAALIDMYAKCGCLDSAREVFDKIVCRDVVLWNSMLAAYSQNGYPEEALSLCSQMAFASERPTVATLVTVISASADIAALPQGREIHGYSWRHGFESQDKVKTALVDMYAKCGPVRVARELFERLQEKRVVSWNAMITGYAMHGYAFDAIDLFEEMRRQAYQPDHITFVGVLSACRHGRLLDEGWNYFNEMANEYCIDPTVQHYTCMVDLLGHTGRLREAHSLIMQMKVMPDSAVWGSLLNACKIHGNVELGELALEKLIELEPDDSGNYVILSNIYAQAGQWDGVARVRRLMTDRGIKKSIACSWIEVKNEVHAFLSGDTSHLLCDAIYAELERVTGLVTEAGYVPTTGTVFHDVEDDEKARMVNSHSERLAIAFGLISTQPETRLLITKNIRVCEDCHVFIKFVSEVTRREITIRDVNRYHHFKEGACSCGDHW*

Click here to download the sequence:
Link to NCBI Protein BLAST