Transcript Information: S_Transcript_188384.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value3E-76
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9253912733767
Replicate 24.0832625449729
Replicate 31.7066412495272
Condition 2: 8 Hour
Replicate 117.187628016794
Replicate 220.702307696463
Replicate 324.179170417591
Condition 3: 24 Hour
Replicate 11.1085463263884
Replicate 21.8942887287693
Replicate 32.7857183372815


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_188384.p1 GENE.S_Transcript_188384~~S_Transcript_188384.p1 ORF type:complete len:335 (+),score=17.28,LRR_8|PF13855.2|7.4e+03,LRR_8|PF13855.2|9.7e-08,LRR_8|PF13855.2|0.04,LRR_8|PF13855.2|96,LRRNT_2|PF08263.8|1.8e-08,LRR_1|PF00560.29|48,LRR_1|PF00560.29|0.29,LRR_1|PF00560.29|14,LRR_1|PF00560.29|9.4,LRR_1|PF00560.29|78,LRR_4|PF12799.3|4.3,LRR_4|PF12799.3|0.024,LRR_4|PF12799.3|0.0065,LRR_4|PF12799.3|33,LRR_4|PF12799.3|84 S_Transcript_188384:59-1063(+)
ATGGTCAGTCTTTACAACTTCATCACTTTCACACTCACCCTCATCCCCCTTTCAAGCCTGTGTTCCTCCACCGAGCTATGCAATCCCAAGGACAAGACAGTCCTTCTCAAGATCAAACACCACTTCAACAACGCCCCTTATTCATTCTCCACATGGAACCCCAAAACCGACTGCTGCAACAAATGGAGCAACGTTGCTTGCGATGACACGGCCAACCCAAGCCGTGTCACCTCGCTAACAATCGCCGGTGACGACAAAGTCACCGGCGAGATCCCGCCAGACGTTGGGGACTTACCTTACCTTACGTCCCTTCAAATCTTCTCCCTCCCGAACCTGACCGGACCCATCCCACCGTCCATTGCCAAGCTCACCAAGCTCAACTTCCTAGCACTAACCAGCAACAATCTCACCGGACCGGTCCCCGATTTCCTAGCCAACCTCACAAAGCTCCAGCTCCTTGACCTCAGCAGCAATGCTTTCACAGGAACCATACCTTCCTCTCTCTCGAACCTCCATGACGTCAGCACTCTTGATGTCAGTTTCAACCAGCTCATGGGTTCGATCCCCGAGAGCTTCGGCTCCTTCAAAACGGGCCTCCTTCTCCAGGTGGTGAACAACCAGATGTCCGGCCCACTCCCGAGGTCGTTGGGCCGGGCTAACCTCACCACAATCGACGTGTCCGGGAACCGGTTCACCGGGGACGCGTCGTTTTTGTTTGGGAGGGGGAAATTCTTGGAGAGTATAGTGTTGAGGGATAATAAATTCAAGTTTGATTTCACTAATGTGGACTTACCTCGAGGTTTGAAGCTCATTGATATGGCGGATAATATGATATATGGTTCGCTACCAAAACGGCTTGGTCAGTTGCCACTGAATTTCATTGATGTTAGTAACAACCAGCTTTGTGGACCGATCCCGACCGGCCGCCGGTTGAAGCAGTTCCGGCCCTATAGGTTTGAGCATAACAAGTGTCTTTGTGGTCCTCCATTACCTCCCTGCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_188384.p1 GENE.S_Transcript_188384~~S_Transcript_188384.p1 ORF type:complete len:335 (+),score=17.28,LRR_8|PF13855.2|7.4e+03,LRR_8|PF13855.2|9.7e-08,LRR_8|PF13855.2|0.04,LRR_8|PF13855.2|96,LRRNT_2|PF08263.8|1.8e-08,LRR_1|PF00560.29|48,LRR_1|PF00560.29|0.29,LRR_1|PF00560.29|14,LRR_1|PF00560.29|9.4,LRR_1|PF00560.29|78,LRR_4|PF12799.3|4.3,LRR_4|PF12799.3|0.024,LRR_4|PF12799.3|0.0065,LRR_4|PF12799.3|33,LRR_4|PF12799.3|84 S_Transcript_188384:59-1063(+)
MVSLYNFITFTLTLIPLSSLCSSTELCNPKDKTVLLKIKHHFNNAPYSFSTWNPKTDCCNKWSNVACDDTANPSRVTSLTIAGDDKVTGEIPPDVGDLPYLTSLQIFSLPNLTGPIPPSIAKLTKLNFLALTSNNLTGPVPDFLANLTKLQLLDLSSNAFTGTIPSSLSNLHDVSTLDVSFNQLMGSIPESFGSFKTGLLLQVVNNQMSGPLPRSLGRANLTTIDVSGNRFTGDASFLFGRGKFLESIVLRDNKFKFDFTNVDLPRGLKLIDMADNMIYGSLPKRLGQLPLNFIDVSNNQLCGPIPTGRRLKQFRPYRFEHNKCLCGPPLPPCK*

Click here to download the sequence:
Link to NCBI Protein BLAST