Transcript Information: S_Transcript_1885.p1


Annotated TAIR IDAT2G46830.1
Annotated Gene Namecircadian clock associated 1
Annotated Gene Symbol(s)CCA1
Annotation TypeOrtholog
Chromosome Positionchr2:19246005-19248717 | Forward length=608
E-Value2.7E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1104.23425483779
Replicate 2207.20636526099
Replicate 3234.83750613118
Condition 2: 8 Hour
Replicate 11.7771158597611
Replicate 22.6100490079681
Replicate 32.8421130139975
Condition 3: 24 Hour
Replicate 1295.63408990604
Replicate 2197.17516071422
Replicate 3233.5140944507


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_1885.p1 GENE.S_Transcript_1885~~S_Transcript_1885.p1 ORF type:complete len:120 (+),score=3.35,Myb_DNA-binding|PF00249.27|2e-14 S_Transcript_1885:1276-1635(+)
ATGGACGCTGCTTACTCTTCCGGTGAAGAGCTAGTTATCAAGACGAGAAAACCTTATACAATTACCAAGCAACGAGAGAGATGGACAGAGGAGGAGCACAATAGGTTTTTGGAGGCCTTGAAACTATATGGACGAGCTTGGCAGCGGATAGAAGAACATATTGGGACAAAGACCGCTGTCCAGATCAGAAGTCATGCGCAGAAGTTCTTTTCAAAGGTCTATCGGTACCTCTCACCTCATGCTCTGTTTATAAAGTTTTACTTATTGTTATTGGTTTCAGCAAAAAGCATTAATATCAGTGTTCTAACTCTATACTTTCTATATTGTGTATTTGTGTTGCAATATGAAATTCCAATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_1885.p1 GENE.S_Transcript_1885~~S_Transcript_1885.p1 ORF type:complete len:120 (+),score=3.35,Myb_DNA-binding|PF00249.27|2e-14 S_Transcript_1885:1276-1635(+)
MDAAYSSGEELVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKVYRYLSPHALFIKFYLLLLVSAKSINISVLTLYFLYCVFVLQYEIPI*

Click here to download the sequence:
Link to NCBI Protein BLAST