Transcript Information: S_Transcript_18973.p1


Annotated TAIR IDAT3G54670.3
Annotated Gene NameStructural maintenance of chromosomes (SMC) family protein
Annotated Gene Symbol(s)TTN8
Annotation TypeOrtholog
Chromosome Positionchr3:20235818-20243701 | Forward length=1239
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.017201143591
Replicate 216.71478387184
Replicate 314.89663892373
Condition 2: 8 Hour
Replicate 118.574292305802
Replicate 218.548229480266
Replicate 319.26658370212
Condition 3: 24 Hour
Replicate 116.926643493534
Replicate 215.233358972434
Replicate 314.403714758879


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_18973.p1 GENE.S_Transcript_18973~~S_Transcript_18973.p1 ORF type:complete len:1217 (+),score=330.27,SMC_N|PF02463.15|8.6e-48,SMC_hinge|PF06470.9|2.7e-23,AAA_23|PF13476.2|6.1e-12,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|5.6e+03,AAA_21|PF13304.2|7.2e-08,AAA_21|PF13304.2|7.1e+02,AAA_21|PF13304.2|56,AAA_21|PF13304.2|2.7e+03,AAA_21|PF13304.2|0.00018,AAA_29|PF13555.2|8.2e-08,AAA_29|PF13555.2|1.7e+03,Reo_sigmaC|PF04582.8|0.4,Reo_sigmaC|PF04582.8|0.6,Reo_sigmaC|PF04582.8|1.7e+02,Reo_sigmaC|PF04582.8|0.072 S_Transcript_18973:247-3897(+)
ATGCCATCCCTAACATCACCAGGCAAAATCCACCGCCTGGAACTGGAGAACTTCAAATCCTACAAAGGCCACCAAGTAATCGGCCCATTCTATGACTTCACCGCCATTATCGGTCCTAATGGTGCCGGGAAGTCGAACCTCATGGACGCCATCAGTTTCGTTCTCGGCGTCCGTACTGGCCAGCTCCGTGGGGCCCAGCTTAAGGACCTCATTTACGCTTACGACGACCGTGACCGCGAGCAGCGCGGTCGCCGTGCTTATGTAAAGCTCGTCTACTCTCTCTCCTCTGGTACTGAGATTCACTTCACTCGTACTATCACTGGTGCTGGTGGTAGTGAGTATAGGATTGATGGTAGGGTTGTTAATTGGGATCAGTATAATGACACGTTAAGGGAGCTTGGTATTCTTGTCAAAGCTCGCAATTTCCTTGTTTTTCAGGGAGATGTTGAGTCAATCGCATCAAAGAATCCCAAAGAACTCACAGCACTTCTCGAGCAGATTTCTGGTTCTGAGGAGCACAAGAAGGACTATGAGGATTTGGAAGAGCAGAAGGCCAGGGCAGAAGAAAAATCTGCTCTTGTTTATCAAAGGAAGAAAACTATAGTTGGGGAGAGAAGGCAGAAAAAGGAACAAAAGGAAGAAGCTGAGAAACATCTTCGCTTGCAAGAAAAATTGAAATCTTTGAAGAAGGAACACTACCTGTGGCAGTTATACAACATAGAAAAGGATATAAACAAGACAACTGAGGAGCTTGAAGCTGAGAAGAAGAGCCGACAAGACCTTGTTCAAGAACAAAATGGTTATGAGCATGAAAAACGTGAAAAGGACAAGGAGCTTGCAAAATATCAGAAAGATTTAAATAGACTGGACCAGAAGATTACGGAAAAAACTAGTAGACTGGATAAGGATAATCCTGAAATTCTGAAGTTGAGCAAAGAAATGTCACGTATAAAATCGAAGATCAAGAGTTCTCAAAAGGAGCTTGAAAAAAAGAGACAAGAAGAGCTGAATCATTCTGGAAAAATAGAAAAGCTTAAGGAGGACTTATCAAATCTCAAACAAAGGCTAAAAGAGATGGAAAAAAATGAACCCGATGCCGGGGGAAAGATCCAATTAGCAGAAAATGAGTTGCAAGAGTACTACCGGGTTAAGGAGGAAGCAGGGAGGAGAACCGTGAAGCTGAGAGATGAAAAGGAGGTTCTGGATAGGCAACAGAAGACTGATATTGAGGCTCAAAAGAATTTAGAAGCGAATCTTCAGCAGTTAAATAGCAGGTTGGAGGAACTGATTTCGCAAGAGAAGAAAATGAAGCAAAAATTGGAGACTGATCGAGAAGACTCAAAGAAACATGAGGAAGAGATGAAACGCTTGAAAAAGGAACGAGAGGAGATGCGCAACAAAAGTCAAGAGTCAAAGAATAAATATGAATCTTTGACAGCAAAAATAGCTGAATTAGAAAATCAATTGCGTGAATTGAAGGCTGAAAAGCATGAAAATGAGAGGGATATTAAGCTGTCTCAAACAGTTGATACGCTTAAGCGTCTTTTCCCCGGTGTCCATGGTCGAATGACAGAACTTTGTCGGCCTACTCAGAAGAAATATAATTTGTCTGTTACTGTAGCTATGGGCAAATTCATGGATGCAGTGGTAGTTCAGGATGAGCATACTGGAAAGGAATGCATCAAGTATCTGAAGGAGCAAAGGCTTCCGCCCCAGACTTTCATACCTCTTCAGTCGATACGTGTGAAGCCAGTTATTGAGAGATTGCGAACATTAGGTGGTACTGCAAAGCTGGTCTATGATGTAATACAGTTTGACCCAGTGTTGGAGAAGGCAATTTTGTTTGCTGTTGGGAATACATTAGTCTGTGACAATCTTGATGAAGCCAAGGTTCTAAGTTGGACAGGGGAGAGGTTCAAAGTTGTTACAACTGATGGAATACTTCTCACAAAAGCTGGCACTATGACCGGTGGCACAACTGGTGGAATGGAGGCAAGGTCAAACAAATGGGATGCCAAGAAAATTGAAGGGCTTAAGAAGAGGAAAGAACAGCTTGAATCGGAGCTGGAGGCTATCGGATCCCCTAGGGAGATGCAATTAAGAGAGACAGAGTTATCAGTAAAAATTAGTGGCTTGGAAAAGAAGATGAAGTATGCAGAGATTGCAGAGAAAAGTATTCGGGACAAGCTTTTGAAATTGGAGAAGGAAAAGAAGACTATTGATCAAGAGATTAAGAGGATTGAGCCTGAGAATGCAAAGTTAGGTGCTAACATCAGGAAGAGGGCTGAGGAAATCAAGAAGATAGATGATCGGATAAACAAAGAAGTTGATCGCATCTACAAAGACTTCAGCAAGGCTGTTGGTGTTGACATCCGTGCATATGAGGAGACCCAGCTTACTGCTGATGCAGAGGTGTTTGAGAGAAAGGTTACTTTGCGTAATCAAATATCGAAGCTGAAATATCAGTTGGAGTATGAGGAGAACCAGGATTTCAAATCACAAATTGAGCAGATTGAGTCCTCCCTAAGTGCATTAGCAAGCGACCTCAATAAAATTGAAGAACGGGAAGTTGAAGCTAAGTTAGAATTGGAGAGTATCACGACTGAGGTTGGTCAAATGAAAGATGAACGTAAAGGGTTGAAGTCCAGGTTGGAAGAATGTGAACATGACAAGCATGAAATAATGAAGAAGATCTCCAGTAGTATGACAAACTTAGATAAGTTGAATCGTCAAATAAATGCAAAGAAAATACAAATTGAAAATCTTGCATCACGGAGGCAGGAGATAATAGAGCAGTGTGATTTAGAACAGATAACCCTGCCAATTGTTTCGGACTCAATGGAAGTTGATTCTGGTGAAGGTCCGAGTTATGATTTTAGTCAGCTGGACAGATCACTTCAAAAGGATATGAGGCCATCTGAACGTGAAAAGCAGGAAGCTGATTTCAGACATAAGATGGATGCTCTTATATCAGATATTGAAAGAACAGCTCCTAACCTCAAGGCTCTTGACCAGTATGAGGCTCTAAAAAAAAAGGAAGATCTTGTAAGTAAGGAGTTTGATGCTGCTAGAAAAGAGGAGAAAGAGATTGCAGACAAATTCAATGCAGTCAGGGAATTAAGACACAAGAAGTTCATGGATGCGTTCAACCATATATCTGGTAACATCGATAAGATCTACAAACAGCTGACTAAGAGTAACACGCACCCCCTCGGTGGGACTGCGTATTTGAATCTGGAAAATGAAGATGAACCATTCTTATATGGCATAAAGTACACAGCTATGCCTCCAACAAAACGGTTTCGTGATATGGAACAGCTCTCTGGTGGTGAAAAGACTGTTGCTGCTCTGGCACTGCTTTTCTCTATACACAGCTTTAAGCCATCACCATTCTTCATTTTGGATGAAGTTGATGCTGCTTTAGATAACTTAAACGTTGCTAAAGTAGCAGGGTTCATTCGTTCAAAATCATGTGGAGCTGCTAGACATAATGAGGATGCTGAAGGCGGCTGTGGGTTCCAAAGCATTGTAATCTCACTCAAGGATAGCTTTTATGACAAGGCTGAAGCATTAGTTGGAGTTTACAGGGATTCTGAGCGAAGCTGCTCAAGCACGTTGACATTTGACCTGACAAAGTATCGGGAGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_18973.p1 GENE.S_Transcript_18973~~S_Transcript_18973.p1 ORF type:complete len:1217 (+),score=330.27,SMC_N|PF02463.15|8.6e-48,SMC_hinge|PF06470.9|2.7e-23,AAA_23|PF13476.2|6.1e-12,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|5.6e+03,AAA_21|PF13304.2|7.2e-08,AAA_21|PF13304.2|7.1e+02,AAA_21|PF13304.2|56,AAA_21|PF13304.2|2.7e+03,AAA_21|PF13304.2|0.00018,AAA_29|PF13555.2|8.2e-08,AAA_29|PF13555.2|1.7e+03,Reo_sigmaC|PF04582.8|0.4,Reo_sigmaC|PF04582.8|0.6,Reo_sigmaC|PF04582.8|1.7e+02,Reo_sigmaC|PF04582.8|0.072 S_Transcript_18973:247-3897(+)
MPSLTSPGKIHRLELENFKSYKGHQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDRDREQRGRRAYVKLVYSLSSGTEIHFTRTITGAGGSEYRIDGRVVNWDQYNDTLRELGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSEEHKKDYEDLEEQKARAEEKSALVYQRKKTIVGERRQKKEQKEEAEKHLRLQEKLKSLKKEHYLWQLYNIEKDINKTTEELEAEKKSRQDLVQEQNGYEHEKREKDKELAKYQKDLNRLDQKITEKTSRLDKDNPEILKLSKEMSRIKSKIKSSQKELEKKRQEELNHSGKIEKLKEDLSNLKQRLKEMEKNEPDAGGKIQLAENELQEYYRVKEEAGRRTVKLRDEKEVLDRQQKTDIEAQKNLEANLQQLNSRLEELISQEKKMKQKLETDREDSKKHEEEMKRLKKEREEMRNKSQESKNKYESLTAKIAELENQLRELKAEKHENERDIKLSQTVDTLKRLFPGVHGRMTELCRPTQKKYNLSVTVAMGKFMDAVVVQDEHTGKECIKYLKEQRLPPQTFIPLQSIRVKPVIERLRTLGGTAKLVYDVIQFDPVLEKAILFAVGNTLVCDNLDEAKVLSWTGERFKVVTTDGILLTKAGTMTGGTTGGMEARSNKWDAKKIEGLKKRKEQLESELEAIGSPREMQLRETELSVKISGLEKKMKYAEIAEKSIRDKLLKLEKEKKTIDQEIKRIEPENAKLGANIRKRAEEIKKIDDRINKEVDRIYKDFSKAVGVDIRAYEETQLTADAEVFERKVTLRNQISKLKYQLEYEENQDFKSQIEQIESSLSALASDLNKIEEREVEAKLELESITTEVGQMKDERKGLKSRLEECEHDKHEIMKKISSSMTNLDKLNRQINAKKIQIENLASRRQEIIEQCDLEQITLPIVSDSMEVDSGEGPSYDFSQLDRSLQKDMRPSEREKQEADFRHKMDALISDIERTAPNLKALDQYEALKKKEDLVSKEFDAARKEEKEIADKFNAVRELRHKKFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDEPFLYGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCGAARHNEDAEGGCGFQSIVISLKDSFYDKAEALVGVYRDSERSCSSTLTFDLTKYRES*

Click here to download the sequence:
Link to NCBI Protein BLAST