Transcript Information: S_Transcript_19008.p1


Annotated TAIR IDAT2G16940.2
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:7342869-7347052 | Reverse length=610
E-Value2.1E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.438675404385
Replicate 244.752362909277
Replicate 339.976726226668
Condition 2: 8 Hour
Replicate 156.463817544227
Replicate 259.933674054722
Replicate 354.682415873006
Condition 3: 24 Hour
Replicate 150.268055759606
Replicate 243.331662474096
Replicate 348.007868612011


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_19008.p1 GENE.S_Transcript_19008~~S_Transcript_19008.p1 ORF type:complete len:352 (+),score=99.79,RRM_1|PF00076.18|0.045,RRM_1|PF00076.18|1e-19,RRM_1|PF00076.18|5.4e-05,RBM39linker|PF15519.2|5.6e-22,RRM_5|PF13893.2|24,RRM_5|PF13893.2|1.3e-06,RRM_5|PF13893.2|3e-07,RRM_6|PF14259.2|2.3e+03,RRM_6|PF14259.2|7.6e-13,RRM_6|PF14259.2|0.13 S_Transcript_19008:2941-3996(+)
ATGGATAGGAATTCAAGACGATCCAAGGGTGTGGGGTATATTGAGTTTTACGACGTAATGTCAGTTCCAATGGCTATAGCACTCTCAGGGCAACCTATTCGTGGTCAGCCAGTCATGGTTAAACCCTCTGAAGCCGAGAAAAACCTGGTCCAGTCCACATCTACCACAGCTGCAGGAGCTGGTGGTCTCACAGGTTCAGGGGCAGCAAGGAGACTCTATGTTGGCAATTTAGTTCCTAATATTACCGAAGAGCAACTTCGTGTGGTCTTTGAACCATTTGGGACTATAGAGCTGGTGCAGTTACCTCGTGATGAGACAGGCCTTTGTAAAGGATTTGCATTTGTCCAGTTTGCACGTCTTGAAGATGCTAAAGCAGCTCAGAATCTAAATGGACAATTGGATATTGGTGGTCGGTTTATTAAGGTATCAGCTGTCACTGATCAACCTGGGATGCAAGATGCTGGGGCAGCTACTGGTGATTTAGATGATGATGAAGGTGGCGGCATGGCTTTGAATGCAAGTTCTCGTGCTCTTCTTATGCAAAAGTTGGATCGCAGCGCCGCTTCTTCAAGCATTCCTGGTACAACTGCCTCACCTGCTGTGAATAACAGCGCTATTTCTGCTGCATCTGCACCAATTTTTGGTGCCACTCCTGGAGTTTCTCCTCTTGTGCAGCCTCCTGTTTCCCCTCTTGGAGGATTGCCTGGTGCTGGTCTCGCTGTTCCATCTGTTAATGTTCCAACAGCTGACTCAATTGGAGTCCCCAGTGAATGTCTATTATTGAAGAATATGTTTGATCCTAAACTGGAGACTGAACCGGATTTTGATCTGGACATCAAAGATGATGTTCAGGATGAATGTGCGAAGTTCGGACCACTGAAGCACATTTTTGTGGACAAGAATAGTGATGGGTTTGTGTACCTGAAATTTGATAACACACAAGCTGCAATGAATGCACAACGTGCACTTCATGGTAGATGGTTTGCAGGAAAGATGATTAGTGCCTTATTCATGCTTCCACAGAATTATGAGGCTAAATTTCCAGAGAGCAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_19008.p1 GENE.S_Transcript_19008~~S_Transcript_19008.p1 ORF type:complete len:352 (+),score=99.79,RRM_1|PF00076.18|0.045,RRM_1|PF00076.18|1e-19,RRM_1|PF00076.18|5.4e-05,RBM39linker|PF15519.2|5.6e-22,RRM_5|PF13893.2|24,RRM_5|PF13893.2|1.3e-06,RRM_5|PF13893.2|3e-07,RRM_6|PF14259.2|2.3e+03,RRM_6|PF14259.2|7.6e-13,RRM_6|PF14259.2|0.13 S_Transcript_19008:2941-3996(+)
MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPIRGQPVMVKPSEAEKNLVQSTSTTAAGAGGLTGSGAARRLYVGNLVPNITEEQLRVVFEPFGTIELVQLPRDETGLCKGFAFVQFARLEDAKAAQNLNGQLDIGGRFIKVSAVTDQPGMQDAGAATGDLDDDEGGGMALNASSRALLMQKLDRSAASSSIPGTTASPAVNNSAISAASAPIFGATPGVSPLVQPPVSPLGGLPGAGLAVPSVNVPTADSIGVPSECLLLKNMFDPKLETEPDFDLDIKDDVQDECAKFGPLKHIFVDKNSDGFVYLKFDNTQAAMNAQRALHGRWFAGKMISALFMLPQNYEAKFPESR*

Click here to download the sequence:
Link to NCBI Protein BLAST