Transcript Information: S_Transcript_190416.p2


Annotated TAIR IDAT5G42765.1
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:17150505-17151641 | Reverse length=229
E-Value2E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3948075434243
Replicate 26.8819710546377
Replicate 37.9523724397177
Condition 2: 8 Hour
Replicate 16.8476023954097
Replicate 27.183621122848
Replicate 37.8223293963234
Condition 3: 24 Hour
Replicate 17.4152356802934
Replicate 26.2377463054167
Replicate 37.4046368895754


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_190416.p2 GENE.S_Transcript_190416~~S_Transcript_190416.p2 ORF type:5prime_partial len:109 (-),score=29.75 S_Transcript_190416:204-530(-)
TGTTTTCTTCCTAATAGATTTATAGAAAAAGAAGATGAAGGAGGAAAGGATAAGAGTAAAGGACAATCACATGGACCTACGGTTTGCACATTCAAACTGATTGTGAAGAATGCATCTTCATTACTTGATGATAGTGATACAAAGAAGATGGCAGCTGAAGCCATGCTGAGTGAGCTTACAAGGTCATTCGCCATTCTCATTGGTTTGGCCAAGGAAGCAAAGATTGAAATTGTGTCCGATAGAGAGAAGATTGCAGATGCTTTGATGGACGCATTATCTTCCCTTGAAAAATTTGAACAAGGGATCAAGGGATGCATTGATGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_190416.p2 GENE.S_Transcript_190416~~S_Transcript_190416.p2 ORF type:5prime_partial len:109 (-),score=29.75 S_Transcript_190416:204-530(-)
CFLPNRFIEKEDEGGKDKSKGQSHGPTVCTFKLIVKNASSLLDDSDTKKMAAEAMLSELTRSFAILIGLAKEAKIEIVSDREKIADALMDALSSLEKFEQGIKGCIDV*

Click here to download the sequence:
Link to NCBI Protein BLAST