Transcript Information: S_Transcript_190512.p1


Annotated TAIR IDAT1G05120.1
Annotated Gene NameHelicase protein with RING/U-box domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:1471624-1476067 | Reverse length=833
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.45622201056
Replicate 24.1310034840954
Replicate 34.8614743651332
Condition 2: 8 Hour
Replicate 17.8743334539204
Replicate 28.5883561200624
Replicate 37.5809499850352
Condition 3: 24 Hour
Replicate 15.4612208726485
Replicate 24.8599177543423
Replicate 35.8833848350846


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_190512.p1 GENE.S_Transcript_190512~~S_Transcript_190512.p1 ORF type:complete len:956 (+),score=201.36,SNF2_N|PF00176.19|8.5e-65,Helicase_C|PF00271.27|5.6e-15,zf-C3HC4_3|PF13920.2|1.6e+04,zf-C3HC4_3|PF13920.2|3.2e+02,zf-C3HC4_3|PF13920.2|3e-07,zf-RING_5|PF14634.2|8.5e+03,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|2.6e-06,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.3e-06,zf-C3HC4|PF00097.21|9.9e+03,zf-C3HC4|PF00097.21|8.7e-06 S_Transcript_190512:33-2900(+)
ATGTTGCACGGGGACGGAAACGGAAACGGTTGTGGGGACGGAAACGGGGACGGGGAAACGGCAAAATCCAAAAATCAAGAAACAGGATGTGCTGGATCTACCATTTCTCAGTCAGATGAAGTACCTGCACAACTAGCAGCTGAGAAGGATTCTGGTTTATGCATGAACCAAGGAGAAGAAAGCGATATTATCCTGGATTCTGATTCTGATGTTAGTTCCAAAGCTGAAAGCAGTGATGGTGATTACGACATTGACAAGGAGATGTTAGATTTAAATGAGCCTCTAGATGTTCCAGACAGTGAGTTGGAGGATGACAATGATGACAAGGAAGTTGATGGTAAATATGTTAAAAACTCAAGAACAAAGTCGTCAAAGAAGAGGGAAAAATATTGCAATAAGCTGGGGAACAATGTTGATGAAAACAACACTGAAGCAGTTATTGATATCAATGAGCTAGGGGCTGAACAATTTGAGGGAATTAGTGGGTTTGAGTTTGTTGATCCAAGTGAGATGAAGAAGCAGAAGAAGAGAAAGAAGAATGGGGAAACAAGGTCAATATTGATGTGGGAGATTTGGGAAGAAGAGCACAATAGGTGGATTGATAAGCATATAAATGAAGATCTTGCATTTGATCAGAAGAATGAGACCATGAATGAAGTGTGGGAGGAACCCTCTGATTTAGGCACACAATTGTTGAGGTTTCAGAAAGAGTGGCTGGCGTGGGCATTGAAACAGGAGGAATCTGTGACTAGAGGGGGAATCCTTGCCGATGAGATGGGAATGGGGAAAACCATTCAGGCAATTGCACTTGTACTTGCCAAACGAGAACTTCGCCAGGGAATTTGTGGACCTGATGGGTCCTTGTTATCAGCAACTTCATCCACCATGTTGCCTCAAGTCAATTGCACCCTTGTAATCTGTCCTGCATCAGCTCTACATCAGTGGCAGAGGGAGATTGAGCGGTTTACACGGGATGGAAGTACGAAGGTGCTCTGTTATCAGGGGCCAAAGAGAGCACAGAATTCTCAACAATTTGCAGAGTATGATTTTATAATCACCACTTACAATACTATAGAGGCTGATTACCGGAAAGTTTTACCACCCAAGAAGAGGTGTGAATGGTGTGGGAAATGTTTTTTTGAACTTAAGATGGCTGTTCACCTCAAATATTATTGTGGGCCAAATGCTGTTAGAACAGAGAAACAGTCTAAGCAAGACAAGAAGGGAAAGAAATTTCATTGCTTAGTCTTAAAAAAGTCTTCTCATGATAAATCTAGTGGTGCAGATGGTGATAAGGTAGAGGTAGCTCAGAAAAAGAGTGGTAAAATACGGCGCTCTATCAGGAAGTTTAAAATTGAACCTGAGCAACGAGATATTGATGATGTTAAGGCCGGTGTGCATACATCAAGTTTGCACTCTGTCAAGTGGGAGCGTGTTATATTGGATGAGGCTCACTGCATAAAAGATAGACGTAGTAATACTGCCAGGGCAGTTCTTGCACTGGACTCCTTGTACAAGTGGGCCTTGAGCGGTACCCCTCTTCAGAATCGTGTTGGAGAACTTTATTCTCTGATTCGCTTTCTTCAAATTGCTCCTTACTCTTACTATTTGTGCAAGGATTGTGATTGCAGAACCCTAGATTACAGTTCTACAGAATGCAAAAACTGCATTCACAAATCTGTAAGGCATTTTTGCTGGTGGAATAAAAATGTGGCCACACCAATGCAAGTGCACGGAAATTCAGGGCGGGGACAAAGAGCCATGTTTTTGTTGAAAAACAAAATTCTTAAGGGCATTTTGCTGAGACGTACTAAGAATGGCAGGGCTTCAGATCTTGCTCTTCCTCCAAGAATTGTTTCACTAAGGCGAGATACTTTGGATATCAAAGAAAAAGATTATTATCAGTCATTGTACAATGAAAGTCAAGCCCAATTCAACACATATGTTAATAGAGGCACTGTGATGAATAATTATGCACACATATTCGACCTACTCACACGGTTACGGCAGGCAGTGGACCATCCATATCTTGTGGTATACTCTCGCACCAACGCTTTGAGAAATGAAAGTATTGCTGACATTGACCATGGCGAACAAACTTGTGGCATTTGTCATGATCCTGTTGAAGATCCTGTGGTTACATCATGCAGCCACAATTTTTGCAAATCTTGCCTGATTGATTTCTCCTCTACCCTGGGACAACCCTCATGTCCAACTTGCTCTAAACCCCTTACTGCTGATTTTACTTCAAACACCATTACAGGAGCCCAGAGAGTGAGAACATCTGTAAATGGGTTTAGGAGCTCAAGCATTTTGAATCGCATTCAACTTGATGAGTTTCAGACAAGCACAAAAATTGATGCATTGAGGGAGGAAATCAGATTCATGATCGAGAGGGATGGATCTGCAAAAGGGATTATATTTAGCCAGTTCACATCATTTTTGGATTTGATTATGTATTCGTTGCAGAAGTCTGGCATATCCTGTGTTCTATTGGAGGGATCTATGACCATCACTGCTAGAGACAGTGTTATCAAACGATTTCACGAGGACCCTGATTGCAGAATTTTCCTCATTAGCTTGAAGGCTGGAGGTGTTGCTCTCAATCTTACGGTGGCTTCACATGTGTTCTTGATGGATCCCTGGTGGAATCCAGCTGCAGAGCGACAAGCTATGGATAGAATACACAGAATTGGGCAATATAAGCCAATAAGAATTGTGAGATTTGTGATAGAGAATACAATAGAGGAAAGAATTTTGAAGCTGCAAGAGAAGAAAGAATTGGTCTTTGAAGGGACTGTAGGTGGGTCTTCTGATGCTCTGGCTAAATTGACGGAGGCAGACTTAAAATTTCTCTTTGTTACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_190512.p1 GENE.S_Transcript_190512~~S_Transcript_190512.p1 ORF type:complete len:956 (+),score=201.36,SNF2_N|PF00176.19|8.5e-65,Helicase_C|PF00271.27|5.6e-15,zf-C3HC4_3|PF13920.2|1.6e+04,zf-C3HC4_3|PF13920.2|3.2e+02,zf-C3HC4_3|PF13920.2|3e-07,zf-RING_5|PF14634.2|8.5e+03,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|2.6e-06,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.3e-06,zf-C3HC4|PF00097.21|9.9e+03,zf-C3HC4|PF00097.21|8.7e-06 S_Transcript_190512:33-2900(+)
MLHGDGNGNGCGDGNGDGETAKSKNQETGCAGSTISQSDEVPAQLAAEKDSGLCMNQGEESDIILDSDSDVSSKAESSDGDYDIDKEMLDLNEPLDVPDSELEDDNDDKEVDGKYVKNSRTKSSKKREKYCNKLGNNVDENNTEAVIDINELGAEQFEGISGFEFVDPSEMKKQKKRKKNGETRSILMWEIWEEEHNRWIDKHINEDLAFDQKNETMNEVWEEPSDLGTQLLRFQKEWLAWALKQEESVTRGGILADEMGMGKTIQAIALVLAKRELRQGICGPDGSLLSATSSTMLPQVNCTLVICPASALHQWQREIERFTRDGSTKVLCYQGPKRAQNSQQFAEYDFIITTYNTIEADYRKVLPPKKRCEWCGKCFFELKMAVHLKYYCGPNAVRTEKQSKQDKKGKKFHCLVLKKSSHDKSSGADGDKVEVAQKKSGKIRRSIRKFKIEPEQRDIDDVKAGVHTSSLHSVKWERVILDEAHCIKDRRSNTARAVLALDSLYKWALSGTPLQNRVGELYSLIRFLQIAPYSYYLCKDCDCRTLDYSSTECKNCIHKSVRHFCWWNKNVATPMQVHGNSGRGQRAMFLLKNKILKGILLRRTKNGRASDLALPPRIVSLRRDTLDIKEKDYYQSLYNESQAQFNTYVNRGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSRTNALRNESIADIDHGEQTCGICHDPVEDPVVTSCSHNFCKSCLIDFSSTLGQPSCPTCSKPLTADFTSNTITGAQRVRTSVNGFRSSSILNRIQLDEFQTSTKIDALREEIRFMIERDGSAKGIIFSQFTSFLDLIMYSLQKSGISCVLLEGSMTITARDSVIKRFHEDPDCRIFLISLKAGGVALNLTVASHVFLMDPWWNPAAERQAMDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSDALAKLTEADLKFLFVT*

Click here to download the sequence:
Link to NCBI Protein BLAST