Transcript Information: S_Transcript_190534.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.90984619607455
Replicate 22.639991912865
Replicate 31.8915626752411
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 13.5474597121478
Replicate 25.6175259462741
Replicate 34.7426066402782


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_190534.p1 GENE.S_Transcript_190534~~S_Transcript_190534.p1 ORF type:complete len:117 (+),score=24.08,UBN2_3|PF14244.2|1.4e-29 S_Transcript_190534:574-924(+)
ATGCTTCAAAATCCTCTATACTTGTATCCTTCTGATCACCCAGGCTTGCTTCTGGTCTCTAAGGTCTTTGATGGTACTGGATTTGGTGCTTGGAAGAAATCTTTTACAATTGCACTCTCAGCTAAGAATAAGCTAGGATTTGTTACAGAAAAGGTCAATAAACCAATTGCTACATCACCAGGATTTGAGTATTGGCAAAAGTGTAATGATGTGGTTACAACATGGTTGTTGAATGTCATGTCCAGAGAAATTGCAAATAGTGTGATATATTCTGATTCAGCTCAAGCATTCTGGGAGGAATTAAATGATAGGTATGGTCAGGCCATAGAACCAAAATTGTATCAATTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_190534.p1 GENE.S_Transcript_190534~~S_Transcript_190534.p1 ORF type:complete len:117 (+),score=24.08,UBN2_3|PF14244.2|1.4e-29 S_Transcript_190534:574-924(+)
MLQNPLYLYPSDHPGLLLVSKVFDGTGFGAWKKSFTIALSAKNKLGFVTEKVNKPIATSPGFEYWQKCNDVVTTWLLNVMSREIANSVIYSDSAQAFWEELNDRYGQAIEPKLYQL*

Click here to download the sequence:
Link to NCBI Protein BLAST