Transcript Information: S_Transcript_190594.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.79953222594963
Replicate 20.28407025181349
Replicate 30.63322698999487
Condition 2: 8 Hour
Replicate 14.0271123345659
Replicate 22.6884624974779
Replicate 34.48273189976
Condition 3: 24 Hour
Replicate 10.65628405336549
Replicate 20.68088704306623
Replicate 31.2989894114223


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_190594.p1 GENE.S_Transcript_190594~~S_Transcript_190594.p1 ORF type:complete len:233 (+),score=40.89,UBN2_3|PF14244.2|2.3e-24,Retrotrans_gag|PF03732.13|3.9e-06 S_Transcript_190594:403-1101(+)
ATGCTATCAACTCAGAAGCTAAATGGTGATAGTTTTGGAGAATGGAAGAGGTCAGCAGAAATTTCTTCCAGTACTTGTACAAAACCAGCAGCTAATTCGCCAGTGTTAGGTCACTGGGAGAGGTGCAACAATCTGTTCTTCACTTGGATTTTGCATTCTCTTGAGCCAGAAATTGCTCGAAGTATTCTCTCTTACAGAACTGCTGCTGAAATCGGTTCCGAGCTTCAAGAAAGGTATTCTCAATCCAATGCTCCTGCCAAATATCATATTCACAAGCATATCAATTCTCTTTTTCAAGGAAATAACTCTGTGACTGAATACTATACTGGTCTGAAAATCTTTTGGGATGAATATTTGTCTTTGTTGAATTTGCCTGTATGCACATGTGGTGCTGGAAATGCCTTTCTAGGAATTTTACAAGAGCAACAAGTTCTACAGTTCCTGTTAGGTCTTAATGATGATTTTATGGCTGTGAGAGGGAATATTCTTATGCAACAACCACTTCCTCCTTTAAGCACAGCATATAGATATGTTGTACAGATAGAAAAACAGAGTGTGGCAATCCTATTTCTCTTGGTTATGAATGTACTTCACTTGTTGCTGTTCCAATTTCCTCATACCATGGAAATGAGCAGTCTCATGGTCAGAACAACAGGACTCCTCAGGTCATTAATTCTGGTTAATTCTGGCAAATGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_190594.p1 GENE.S_Transcript_190594~~S_Transcript_190594.p1 ORF type:complete len:233 (+),score=40.89,UBN2_3|PF14244.2|2.3e-24,Retrotrans_gag|PF03732.13|3.9e-06 S_Transcript_190594:403-1101(+)
MLSTQKLNGDSFGEWKRSAEISSSTCTKPAANSPVLGHWERCNNLFFTWILHSLEPEIARSILSYRTAAEIGSELQERYSQSNAPAKYHIHKHINSLFQGNNSVTEYYTGLKIFWDEYLSLLNLPVCTCGAGNAFLGILQEQQVLQFLLGLNDDFMAVRGNILMQQPLPPLSTAYRYVVQIEKQSVAILFLLVMNVLHLLLFQFPHTMEMSSLMVRTTGLLRSLILVNSGKC*

Click here to download the sequence:
Link to NCBI Protein BLAST