Transcript Information: S_Transcript_191006.p1


Annotated TAIR IDAT5G13230.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4222514-4224982 | Forward length=822
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3990834935066
Replicate 21.3615892984066
Replicate 32.0234316160293
Condition 2: 8 Hour
Replicate 13.4364343253894
Replicate 23.911877533575
Replicate 32.9476772116603
Condition 3: 24 Hour
Replicate 11.2233134754733
Replicate 22.2016274102737
Replicate 31.3836092930807


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_191006.p1 GENE.S_Transcript_191006~~S_Transcript_191006.p1 ORF type:5prime_partial len:875 (+),score=140.65,PPR_2|PF13041.2|0.064,PPR_2|PF13041.2|1.9e-07,PPR_2|PF13041.2|1.4e+02,PPR_2|PF13041.2|3.7e-07,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|6.4e-11,PPR_2|PF13041.2|2.8,PPR_2|PF13041.2|1.1e+03,PPR|PF01535.16|0.032,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|1.7,PPR|PF01535.16|0.0003,PPR|PF01535.16|0.047,PPR|PF01535.16|0.0088,PPR|PF01535.16|0.019,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|4.9e+02,PPR|PF01535.16|0.0094,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|85,PPR|PF01535.16|0.0046,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.8e+02,DYW_deaminase|PF14432.2|1.1e-38,PPR_1|PF12854.3|0.74,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|4.9e+03,PPR_1|PF12854.3|7.5,PPR_1|PF12854.3|18,PPR_1|PF12854.3|3.9e+02,PPR_1|PF12854.3|61,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|8.8,PPR_1|PF12854.3|0.0064,PPR_1|PF12854.3|46,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|5.7e-05,PPR_1|PF12854.3|0.19,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|6.8e+02,PPR_3|PF13812.2|0.092,PPR_3|PF13812.2|99,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|7.4e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|0.069,PPR_3|PF13812.2|0.74,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|2.3e+02,TPR_14|PF13428.2|2.8,TPR_14|PF13428.2|81,TPR_14|PF13428.2|4.8e+03,TPR_14|PF13428.2|1e+04,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|81,TPR_14|PF13428.2|7.6e+02 S_Transcript_191006:1-2625(+)
CTCCCGACAATAGTTTTCCTCCTATCTTTCGCCATAACAGTATTGTATGAATTGTTGTACAGTTGTACTTGTACCCACCTCCCTCCCCGGGCTCCCCACGGTAAAAACGACCCTAAATTCCCGATGCTGCGACTAAGAGCGTCGCCATGTCTGAACCCGCCGTTTTATTGCCAAAGCTTTACTTGGGTAAGTTCAAAATGGGTCGGATTCTCAGCTCAAGCACCCGAACTGGGCCCAGAGGTCGCAGCTCCTCCTCCTCCTCCTGGGATGTCAACATATTTAGAGTTCGATTCTCATGCATATGGAAGTGTTCTTCAGGATTGTACTCTGCATCACCAACCCATCAAAGGTCAAGCCCTTCATTGTCAAGTTCTCAAGAGAGGTAATGTTCTAGACCTCTTTGCTCGCAACATTCTTCTCAATTTCTATGTCAAATGTGACCTTCTATCAGATGCATGTAAGCTGTTTGGTGAAATGCCTCTGAGAAATACAATTTCATTTGTTACCCTAATTCAAGGGTTTAGTCAAGCTGGTAGGTTTGATGAGGCCTTGCAGTTATTCTCTAGGCTTCATAGGGAAGGCCATGAGCTCAATCCCTTTGTATTCACCACTATTTTGAAGTTGTTTGTGTGTATGGAAAGGCCTTATTTAGGTAGCTATATCCATGCCTGCATTTATAAGCTTGGTCATGATAGGGATGCATTTGTGGGCACTGCCCTTATTGATTCTTTCTCCATGTGTGGCCTTGTGGATATTGCAAGGGATGTATTTGATGCCATTTTGATCAAAGACATGGTTTGTTGGAGTGGAATGGTGGCTGGCTATACTGAGAATAATTGCTTCAGAGAGGCATTAGAGCTTTACTCAGATATGAGGATGTTCGGTTTCAAGCCCAACAATTTTACTTTTGCTAGTGGCTTGAAGGCTTGTCTTGGGTTGGGAGATGTTCATCTGGCCCTTTGTATTCATGGGTGTATTATAAAAACTAATTATGAGAAGGGCAACTATGTTGCTATTTCCCTCCTTGATTTGTATACCAGTTGTGGAGATCCTAGGGATGCTCAGCGAGTGTTTGAGGACATGCCAAAAGAAGATGTGGTTTCTTGGAGCTTCATGATCGCTCGCTGTGCACAGACTGACCAGTGTGACGTGGCTGTCGATTTGTTTCAGCGAATGAGGCAAGCTTTTGTCATGCCTAATGAGTTTACTTTAGCAAGCATGTTGCAGGCATGTGCGAGTATGACTAGTTTTGATATTGGGAAGCAAATACATTCCCTTGTCATAAAGGCTGGCCTTGCTTCTAATGTGTTTGTCTCTAATGCCCTAATTGATGTTTATGCAAAGTGTGAAAGGATGGAGGACTCAGTGTTTTTGTTTGAGGAATCAAAAGATAAAAATGATGTGACCTGGAACACTATGATTGTTGGCTATGGGCAATTAGGGGATGGCGAGAAAGCATTTTTGATGTTCAAGAATATGCTTGAGCACAAGCTGCTTCCAACTGAAGTAACATATTCAAGTATACTCCGTGCATGTGCTTGTTTAGCAGCAGTTGATCCTGGAATGCAGATCCATGCCTTTACTGTTAAAACCAAGTTTGACAAAGATAGTGTGGTAAGTAATTCTTTAGTAGATATGTATGCCAAGTGTGGTGACATTAAGCATGCTCGTTTAGTATTTGACGTGATGGAAAGACCGGATCAAGTTTCATGGAATACTATGATTTCAGCTTATGCCATGCATGGCCTTGGAAGGGAGGCATTAAGAATCTTTGAGAAGATGCAGAAAGCGGAGTTTAAACCAAACAAGTTGACTTTCGTTGGTGTTCTATTGGCTTGCAGCAACATGGGGCTGGTAGATGAAGGCCAAGCTTATTTTACTTCAATGATCCAGGACTATGGAATTGAACCATGCATAGAGCACTATACATGCATGGTATGGCTTTTAGGGCGATCAGGCAATCTTGATAAAGCTATGAAACTGATAGTGGAGATGCCATTTGATCCTAGTATCATGGTTTGGCGTGCTATGCTTGGAGCTTGTCTCATACACAGTGATGTTGAACTTGGGAAAGTTGCTGCCGAACATGTGCTTGAAATGGAACCAGAGGATGAGGCGGCCTATGTGTTATTGTCAAACATTTATGCATCTGCAAAGAGATGGGGAAATGTAGCTTATGTTAGGAAAAGCATGAAGAAGAAAGGAGTGAAGAAAGAACCAGGAATGAGTTGGATTGAGACACAGGGCAATGTACATTATTTCACAGTGGGTGATACATCACATCCTGATATTAGGTTAATAAATGGGATGATAGAATGGTTGAAGAAGAGAATCCAGAAAGAAGGGTATGTCCCAAATAGCAATGTGATTCTGCTTAATGTAGAAGATGATGAAAATGAACGAATCTTATGGTCGCATAGTGAAAGACTGGCATTAGCTTTTGCACTAGTTAGGACGCCATTGGGTAGCTCCATCCGTATACTTAAAAACCTTCGTATATGTGCAGATTGCCATGCTGCAATTAAGCTTATATCAAAGGTTATACAGAGAGACATTGTCATCAGGGATATAAACCGATTTCACCACTTTCAGAATGGTATCTGCTCATGTGGTGATTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_191006.p1 GENE.S_Transcript_191006~~S_Transcript_191006.p1 ORF type:5prime_partial len:875 (+),score=140.65,PPR_2|PF13041.2|0.064,PPR_2|PF13041.2|1.9e-07,PPR_2|PF13041.2|1.4e+02,PPR_2|PF13041.2|3.7e-07,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|6.4e-11,PPR_2|PF13041.2|2.8,PPR_2|PF13041.2|1.1e+03,PPR|PF01535.16|0.032,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|1.7,PPR|PF01535.16|0.0003,PPR|PF01535.16|0.047,PPR|PF01535.16|0.0088,PPR|PF01535.16|0.019,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|4.9e+02,PPR|PF01535.16|0.0094,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|85,PPR|PF01535.16|0.0046,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.8e+02,DYW_deaminase|PF14432.2|1.1e-38,PPR_1|PF12854.3|0.74,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|4.9e+03,PPR_1|PF12854.3|7.5,PPR_1|PF12854.3|18,PPR_1|PF12854.3|3.9e+02,PPR_1|PF12854.3|61,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|8.8,PPR_1|PF12854.3|0.0064,PPR_1|PF12854.3|46,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|5.7e-05,PPR_1|PF12854.3|0.19,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|6.8e+02,PPR_3|PF13812.2|0.092,PPR_3|PF13812.2|99,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|0.46,PPR_3|PF13812.2|7.4e+02,PPR_3|PF13812.2|3,PPR_3|PF13812.2|0.069,PPR_3|PF13812.2|0.74,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|2.3e+02,TPR_14|PF13428.2|2.8,TPR_14|PF13428.2|81,TPR_14|PF13428.2|4.8e+03,TPR_14|PF13428.2|1e+04,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|81,TPR_14|PF13428.2|7.6e+02 S_Transcript_191006:1-2625(+)
LPTIVFLLSFAITVLYELLYSCTCTHLPPRAPHGKNDPKFPMLRLRASPCLNPPFYCQSFTWVSSKWVGFSAQAPELGPEVAAPPPPPGMSTYLEFDSHAYGSVLQDCTLHHQPIKGQALHCQVLKRGNVLDLFARNILLNFYVKCDLLSDACKLFGEMPLRNTISFVTLIQGFSQAGRFDEALQLFSRLHREGHELNPFVFTTILKLFVCMERPYLGSYIHACIYKLGHDRDAFVGTALIDSFSMCGLVDIARDVFDAILIKDMVCWSGMVAGYTENNCFREALELYSDMRMFGFKPNNFTFASGLKACLGLGDVHLALCIHGCIIKTNYEKGNYVAISLLDLYTSCGDPRDAQRVFEDMPKEDVVSWSFMIARCAQTDQCDVAVDLFQRMRQAFVMPNEFTLASMLQACASMTSFDIGKQIHSLVIKAGLASNVFVSNALIDVYAKCERMEDSVFLFEESKDKNDVTWNTMIVGYGQLGDGEKAFLMFKNMLEHKLLPTEVTYSSILRACACLAAVDPGMQIHAFTVKTKFDKDSVVSNSLVDMYAKCGDIKHARLVFDVMERPDQVSWNTMISAYAMHGLGREALRIFEKMQKAEFKPNKLTFVGVLLACSNMGLVDEGQAYFTSMIQDYGIEPCIEHYTCMVWLLGRSGNLDKAMKLIVEMPFDPSIMVWRAMLGACLIHSDVELGKVAAEHVLEMEPEDEAAYVLLSNIYASAKRWGNVAYVRKSMKKKGVKKEPGMSWIETQGNVHYFTVGDTSHPDIRLINGMIEWLKKRIQKEGYVPNSNVILLNVEDDENERILWSHSERLALAFALVRTPLGSSIRILKNLRICADCHAAIKLISKVIQRDIVIRDINRFHHFQNGICSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST