Transcript Information: S_Transcript_191184.p1


Annotated TAIR IDAT3G48250.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17870064-17871929 | Reverse length=621
E-Value9.4E-180
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2709537492923
Replicate 21.0855786468242
Replicate 31.0142170349882
Condition 2: 8 Hour
Replicate 12.2837610469868
Replicate 22.3958274954266
Replicate 32.683760841727
Condition 3: 24 Hour
Replicate 10.69549556699432
Replicate 20.65597139150065
Replicate 30.76651654487328


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_191184.p1 GENE.S_Transcript_191184~~S_Transcript_191184.p1 ORF type:5prime_partial len:691 (+),score=91.64,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|0.0068,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|17,PPR|PF01535.16|77,PPR|PF01535.16|1.4,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.0042,PPR|PF01535.16|6.8e-05,PPR|PF01535.16|0.00021,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|0.011,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|15,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.0092,PPR_1|PF12854.3|1.4e-07,PPR_1|PF12854.3|8.5e-06,PPR_1|PF12854.3|5.8e+03,PPR_1|PF12854.3|14,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|8.5e+02,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|0.091,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|5,PPR_3|PF13812.2|5e+02,PPR_3|PF13812.2|0.055,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|1.4e+02 S_Transcript_191184:2-2074(+)
AAAATCCCAAGTTACCAACAACAGAATCGACCCCAAAATCACTTGCAAGTTGCAACTCCTAAAACCCTCGAAAAACCCTTCCTCAAACCAACAGCCATGAACAGAGCTCGGTTAATTCGCCTCTCAGCAAGACTTGCCAACTCGGTGACCTCAACTCAGCACCCAGTACCCCACCCGCTCAGCTCAGCTCAGGTGACTCGCTTCTCTAACCTAACTCAGTATCCTGTTTATTTCTCATTCTCAAAAAAACCATACACTTATCATGACAAGTCCCCATTTACCCTCCAATACTTGTTCTTCTCTTCAAAGCCTGAAACTTTCATTGATATTGTATTATCTAATGATTGGTCAGAAGAAATTGAAAATGAATTGGAAAAATCTAACCCAAAACTGACCCATGGATCTATAGTCCATATTTTGATGAAATCCAGAAAAAACCCACAAAAGGCTTTAGCTTTCTTCAAATGGGCTTGTAATAAAAAAGGGTTTAAGCCAAGTTCTGTGCTTTATAATATATTGCTTAGAATTTTGGCTGGTAAAGATTTTATGGATCAGTTTTGGGGTGTTGCCTGGGAAATGAAGGGAAAAGGGATTTGTGTTGATAAACAGTCATACTTAACAATTCATGGGATTCTAAAGCAAGAAAAATTGGTCAACGAAAAGGTGACTTGGACTAATTTTTATAATAAGATGTGTCGAGATTATGCTAGGAATAATAATGTTGCCGAAAATGTGGTTGATGTTATCTTGGGGTCTTATTGGACTGAAAAAGTGGAGGGTAAGTTGAAAGAGATTATTAAGTTTCCGTTGTCGGAGAACTTTTTGTTGATTGTGTTCTCCAACCTCTGGCCGCAACCATCGAGGGCGTTGAAGTTTTTCGATTGGCTTGGCCATTGTCAAGGATATGAACACAATGCTGTTACGTATAATGAGATGGCCAAGGTCTTAGGACAACGTGAATCGATGGAGATGTTTTGGGACTTAGTCAAGCGGATGAGAAGCGAGGGGTATGAGATGGATACTAATACATATGTGAAGATCTCAAGGAATCTTCGTAATGGAGATGCTGTGGACTTATTTGAATTTATGATGGATGGACCCTATAAGCCATCAGAACATGATTGTACCATGCTTTTAAAGAACCTTTCGTTTGATATGAATCCGGATATGGATTTGGTATCTAGGGTGATTAAAAGGTATGAGGCAGCAGGATATACCCTAACGAAGGCTATTTATGATTCCATACATCGATCTGTGTGTAAAGTTGGGAGATTTGATGAGGCCAAGAAGCTTGTGGAGGACATGAAAAACGCTGGGCACAAACCTGACAACATTACTTATAGTCAGGAGATACATGGCCTGTGTAAGCTAAAGAGGTTTGAAGAAGCATGGAAAGTGCTAGAACAAATGGAATCTGAGGGATGTGTTCCAGATGTCAAAACTTGGACGATTTTAATCCAAGGTTATCACGCAGCTGGTTTACTAGATGAGGCCTTGTTATGCTGTGAGAAGATGACACGGAAGAAGATTGATCCAGATGCTGATGTATTGGAAGTCTTCATAAATGGTTTTCTGTCTCAAAATAAATTGCTTGGTGCTTACACAACCCTTATTGAGATGGTAAACAAGGCTCATCTGAGACCATGGCAGGCTACATACAAACTTATGATCGAGAAACTACTGGAGGTGGGGAAACTCGAAGAAGCGCTTAACCTTCTGAGTATGATGAAGCAGCATAATTATCCGCCTTATCCTGACCGATTTGTTCAATATTTCGCCAAATCTGGCTCTGTGGAAGATGCCACGAAGTTCATAAAAGCATTACCTGTAAAGGGTAATCCGTCTACTAAAGCTTATGTTCGTGTTATTAAATCATTTTTAAATGAAGGTAGACATTCCGAGGCTGAGGATCTGCTTTACAAGAGCCCTCATCGAGTTCGCACCAGCAAGAGAATTACCAGTCTCTTTGGTTCAGTTCAGACCAAGAGTCAGACTCCTATGTCTTTTGTGAAGGATGAAGGCCCAGATATGACTCCTATGTCTTTCGTGAAGGATGAAGGCCCAGGTATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_191184.p1 GENE.S_Transcript_191184~~S_Transcript_191184.p1 ORF type:5prime_partial len:691 (+),score=91.64,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|0.0068,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|17,PPR|PF01535.16|77,PPR|PF01535.16|1.4,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.0042,PPR|PF01535.16|6.8e-05,PPR|PF01535.16|0.00021,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|0.011,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|15,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.0092,PPR_1|PF12854.3|1.4e-07,PPR_1|PF12854.3|8.5e-06,PPR_1|PF12854.3|5.8e+03,PPR_1|PF12854.3|14,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|8.5e+02,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|0.091,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|5,PPR_3|PF13812.2|5e+02,PPR_3|PF13812.2|0.055,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|1.4e+02 S_Transcript_191184:2-2074(+)
KIPSYQQQNRPQNHLQVATPKTLEKPFLKPTAMNRARLIRLSARLANSVTSTQHPVPHPLSSAQVTRFSNLTQYPVYFSFSKKPYTYHDKSPFTLQYLFFSSKPETFIDIVLSNDWSEEIENELEKSNPKLTHGSIVHILMKSRKNPQKALAFFKWACNKKGFKPSSVLYNILLRILAGKDFMDQFWGVAWEMKGKGICVDKQSYLTIHGILKQEKLVNEKVTWTNFYNKMCRDYARNNNVAENVVDVILGSYWTEKVEGKLKEIIKFPLSENFLLIVFSNLWPQPSRALKFFDWLGHCQGYEHNAVTYNEMAKVLGQRESMEMFWDLVKRMRSEGYEMDTNTYVKISRNLRNGDAVDLFEFMMDGPYKPSEHDCTMLLKNLSFDMNPDMDLVSRVIKRYEAAGYTLTKAIYDSIHRSVCKVGRFDEAKKLVEDMKNAGHKPDNITYSQEIHGLCKLKRFEEAWKVLEQMESEGCVPDVKTWTILIQGYHAAGLLDEALLCCEKMTRKKIDPDADVLEVFINGFLSQNKLLGAYTTLIEMVNKAHLRPWQATYKLMIEKLLEVGKLEEALNLLSMMKQHNYPPYPDRFVQYFAKSGSVEDATKFIKALPVKGNPSTKAYVRVIKSFLNEGRHSEAEDLLYKSPHRVRTSKRITSLFGSVQTKSQTPMSFVKDEGPDMTPMSFVKDEGPGI*

Click here to download the sequence:
Link to NCBI Protein BLAST