Transcript Information: S_Transcript_191331.p1


Annotated TAIR IDAT1G27595.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:9596475-9602917 | Forward length=961
E-Value2E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2672857731038
Replicate 21.5008700379262
Replicate 31.0036863174749
Condition 2: 8 Hour
Replicate 12.3211309188716
Replicate 21.3697050187588
Replicate 31.1600461281623
Condition 3: 24 Hour
Replicate 12.2290697439382
Replicate 20.61670235581898
Replicate 31.3726282669451


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_191331.p1 GENE.S_Transcript_191331~~S_Transcript_191331.p1 ORF type:3prime_partial len:147 (-),score=36.56 S_Transcript_191331:3-410(-)
ATGGCTTCCAAACACATGCATTTTACTTCAAATGGCAAGTCATCGGATGTGGTTCAGATGAATCAGTCTGGAGATGATAAGCACACTATTAATGGGATCTCTTCTAAAGTTCCAATGCTGAATTGTAATTTGAACCCTGTTGAGCAAATGATTGCTGTAATTGGTGCTTTACTAGCCGAAGGTGAAAGAGGTGCTGAGTCACTTGAACTTTTAATATCTCAAATTCATCCTGATCTGCTAGCTGACATTGTCATCACCAATATGAAGTATTTGCCTAAGACTCCACCACTAGCAAAACCCGGTAGCTTGCCCTTAAATGCACAACCACAATATACCTCTGTAGCCACAGTTGCGAAGACTGCTGCTCTTGAGACATTACCAGTTGAATCTTCGGTTCCTACCTCACAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_191331.p1 GENE.S_Transcript_191331~~S_Transcript_191331.p1 ORF type:3prime_partial len:147 (-),score=36.56 S_Transcript_191331:3-410(-)
MASKHMHFTSNGKSSDVVQMNQSGDDKHTINGISSKVPMLNCNLNPVEQMIAVIGALLAEGERGAESLELLISQIHPDLLADIVITNMKYLPKTPPLAKPGSLPLNAQPQYTSVATVAKTAALETLPVESSVPTSQ

Click here to download the sequence:
Link to NCBI Protein BLAST