Transcript Information: S_Transcript_191419.p1


Annotated TAIR IDAT5G60960.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24528423-24529988 | Reverse length=521
E-Value5E-109
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6147922145246
Replicate 26.3127634861097
Replicate 35.1170597226175
Condition 2: 8 Hour
Replicate 18.2589661921845
Replicate 24.6554135897697
Replicate 36.776714556497
Condition 3: 24 Hour
Replicate 15.4927886233575
Replicate 24.4541595005538
Replicate 34.5924531720298


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_191419.p1 GENE.S_Transcript_191419~~S_Transcript_191419.p1 ORF type:5prime_partial len:346 (-),score=75.20,PPR_2|PF13041.2|0.23,PPR_2|PF13041.2|5.7e-07,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|3.8e-05,PPR_2|PF13041.2|5.8e+03,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|2.5,PPR|PF01535.16|3.1e+02,PPR|PF01535.16|0.032,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|5.1e+03,PPR|PF01535.16|1e-06,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.14,PPR|PF01535.16|0.32,PPR_1|PF12854.3|51,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|3.8e+02,PPR_1|PF12854.3|0.00022,PPR_1|PF12854.3|59,PPR_1|PF12854.3|1.7,PPR_3|PF13812.2|9.2,PPR_3|PF13812.2|82,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|21,PPR_3|PF13812.2|3.8 S_Transcript_191419:389-1426(-)
AGGAAATCAAGCACAGAGCGCCCAGCATCAGGAGAGAGGTTAAGAGTATGGAGAATTAGAGGTGGGGTTAGAGTTACATGGGAGAAAGATTATGGCATTGTTAGGACTAAGGAAAGGTTGAATTTTGTTGTTAATAGGCTTTGTGAAAATGGGTATGCTAATTATGCTGAGAAGATCGTTAAGAGTCTTGCTAATGAGTTTTTCCCTGATGAGTATGTTTGTGATATGTTGATTAAAGGGTGGTGTGTTGATGGGAAGCTCGAGGAGGCGAGACGGTTGGCTAGGGAGATGTATAGGGGAGGGTTTGAGATTGGGTCGACGGCGTATAATGCCATTCTTGATTGTGTGTGTAGGCTTTGTAGGAAGAAGGACCCTTTTCGGCTTCGGACCGAGGCCGAGAATGTGTTAGTAGATATGGATGCGGCAGGTGTGCCTTGGGATACCGAGACCTTCAATGTGTTGATTACGAATTTGTGTAAGCTTCGTATGACCGAGGAGGCTATGAAGTTGTTCTTTAGGATGAGTGAGTGGGGGTTTTTTACTGGTGCGGCGACCACTGTGATTTACACTCGGACCCTGTACGACGCTGTTAGGGTCGGGGAGGGCGACGAGATGATTGATAGGATGAAGTCTGCAGGGTTCGGGGATGCTCTTGATAAGAAGGCTTATTATGAGTGTTTGAAGATCCTTTGTGGGATTGAAAGGGTTGATCATGCTTTGAGTATCTTTGCAAAGATGAAGAAGGATGGTTGTAAACCTGGGGAGAAGACTTATGAGCTATTGATAAAGAAGTTGTATGCTCACGGTCGTGTGGAGAGAGCAAAGAGTCTTTACAATGAAGCTGCCCAAAATGGGGTGTCAGTTGAAGCTAAGGTTTACCCGTTGGATCCGAGATTTGTGAAGACGCCCACTGTTGTGAAGAAGGGGAAGAAGCGGCTGACATTGCCCGAGAAAATGGCATTGAAAAGAAAACGGCTCAGGAAGATTAATTTGAGTTTTGTGAAGAAGCCAAGGAATATGATGCGACGAGCACTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_191419.p1 GENE.S_Transcript_191419~~S_Transcript_191419.p1 ORF type:5prime_partial len:346 (-),score=75.20,PPR_2|PF13041.2|0.23,PPR_2|PF13041.2|5.7e-07,PPR_2|PF13041.2|0.0011,PPR_2|PF13041.2|3.8e-05,PPR_2|PF13041.2|5.8e+03,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|2.5,PPR|PF01535.16|3.1e+02,PPR|PF01535.16|0.032,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|5.1e+03,PPR|PF01535.16|1e-06,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.14,PPR|PF01535.16|0.32,PPR_1|PF12854.3|51,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|3.8e+02,PPR_1|PF12854.3|0.00022,PPR_1|PF12854.3|59,PPR_1|PF12854.3|1.7,PPR_3|PF13812.2|9.2,PPR_3|PF13812.2|82,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|21,PPR_3|PF13812.2|3.8 S_Transcript_191419:389-1426(-)
RKSSTERPASGERLRVWRIRGGVRVTWEKDYGIVRTKERLNFVVNRLCENGYANYAEKIVKSLANEFFPDEYVCDMLIKGWCVDGKLEEARRLAREMYRGGFEIGSTAYNAILDCVCRLCRKKDPFRLRTEAENVLVDMDAAGVPWDTETFNVLITNLCKLRMTEEAMKLFFRMSEWGFFTGAATTVIYTRTLYDAVRVGEGDEMIDRMKSAGFGDALDKKAYYECLKILCGIERVDHALSIFAKMKKDGCKPGEKTYELLIKKLYAHGRVERAKSLYNEAAQNGVSVEAKVYPLDPRFVKTPTVVKKGKKRLTLPEKMALKRKRLRKINLSFVKKPRNMMRRAL*

Click here to download the sequence:
Link to NCBI Protein BLAST