Transcript Information: S_Transcript_191480.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2.3E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.373152397884
Replicate 21.517833188232
Replicate 31.5406708276226
Condition 2: 8 Hour
Replicate 14.4537055944872
Replicate 22.9132874150013
Replicate 33.4566239359429
Condition 3: 24 Hour
Replicate 11.4491691750517
Replicate 21.6148661811157
Replicate 31.7351775020719


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_191480.p1 GENE.S_Transcript_191480~~S_Transcript_191480.p1 ORF type:complete len:407 (+),score=52.52,DDE_Tnp_4|PF13359.2|7.7e-26 S_Transcript_191480:1810-3030(+)
ATGCATTCCCTATCTTATTTCTCATCCACAGATATATCAGCTGTCATGGACGACTTTGATATAAAATTGGATGAGATGGAGTTAGTTGCAGCTGCAGTTGGATACTATTGCTTTAATAGTATAACTAAACAGCCTTGTCATAGCCTGTCACCTAATCGCCCTAACTACATGGCTGAGTTGATGGAGGGTCCAGAAGATATATGCCGTGAAATGCTTCGGATGGATAAACATGTCTTCCACAAGTTAAGTGGCATTCTTCGACAAAGAGGCATGCTACGTGATACCGCTGGTGTGTCTATAGAAGAGCAACTGGCCATTTTTTTGAACATAATTGGACATAATGAGCGAAATCGAGTCATACAAAACAGGTTCCAGCATTCTGGGGAAACCATCAGCCGGCATTTCAACAATGTTTTGAAATCTATTAAGTCTTTATCTCGTGAATTTCTACAGCAACCACCTGTCGATACACCTCTACAAATCCTTAGAAGCAAACGGTATTTTCCATATTTCAAGGATTGCATTGGAGTCATAGATGGCATGCATATCCCTGCTCATGTGCCAGCGAAAGATCAATCTCGTTTCCGTAACAAGAATGGTTCCCTGTCTCAAAATGTCTTAGCTGCCTGCACGTTTGATCTGCAGTTTATATTTATATATCCTGGATGGGAAGGTTCAGCTTCAGATTCTCGTGTGCTGCAGGCTGTATTAGATGATCTGGATCAGAATTTTCCTCTCGTCCCTGAAGGTAAGTATTATCTTGTTGATGCGAGTTACCTGAATATGGAAGGTTTTGTTGGTCCATTCCAAGGAGTGCGCTACTGCATGCATGAATATAAAGGTGCTAACTGTCTTCCACGAAATGTTCAAGAGCTCTTTAATCATCGGCACTCATCATTAAGACATGCCATTTTGAGAACCTTTCATGTGTTAAAGGAACGATTTCCTGTTTTGAAACTCGCCCCTCAGTATGCATTTCAAGTTCAAAGAGATGTCGTCATTGCTGCGTGTGTCATCCATAATTTTATCCGACGTCAGGACAGTAATGATTGGCTATTTGCCAGTGTCGAAGAAAAGATTGTGGAAGAGAGTCCAGATATCGATGATCTGCCAGATATACAACAGAGATCTCCGTTGAAACCGCAAATGGGGCTGTTTTTAAGAGATTCAATCGCTACATCTATGTGGAATGACTTCTTGAATGAATGGAATGAATGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_191480.p1 GENE.S_Transcript_191480~~S_Transcript_191480.p1 ORF type:complete len:407 (+),score=52.52,DDE_Tnp_4|PF13359.2|7.7e-26 S_Transcript_191480:1810-3030(+)
MHSLSYFSSTDISAVMDDFDIKLDEMELVAAAVGYYCFNSITKQPCHSLSPNRPNYMAELMEGPEDICREMLRMDKHVFHKLSGILRQRGMLRDTAGVSIEEQLAIFLNIIGHNERNRVIQNRFQHSGETISRHFNNVLKSIKSLSREFLQQPPVDTPLQILRSKRYFPYFKDCIGVIDGMHIPAHVPAKDQSRFRNKNGSLSQNVLAACTFDLQFIFIYPGWEGSASDSRVLQAVLDDLDQNFPLVPEGKYYLVDASYLNMEGFVGPFQGVRYCMHEYKGANCLPRNVQELFNHRHSSLRHAILRTFHVLKERFPVLKLAPQYAFQVQRDVVIAACVIHNFIRRQDSNDWLFASVEEKIVEESPDIDDLPDIQQRSPLKPQMGLFLRDSIATSMWNDFLNEWNEW*

Click here to download the sequence:
Link to NCBI Protein BLAST