Transcript Information: S_Transcript_192254.p1


Annotated TAIR IDAT5G42310.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16915860-16918238 | Forward length=709
E-Value5E-67
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2617281502986
Replicate 22.3750311704973
Replicate 31.8285998949746
Condition 2: 8 Hour
Replicate 13.2018291410993
Replicate 23.3589461130468
Replicate 33.3211660574333
Condition 3: 24 Hour
Replicate 12.4134573828135
Replicate 21.7976961023732
Replicate 32.5722198260175


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_192254.p1 GENE.S_Transcript_192254~~S_Transcript_192254.p1 ORF type:complete len:353 (-),score=68.15,PPR_2|PF13041.2|2.5e-05,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|0.71,PPR_2|PF13041.2|1.5e-05,PPR_2|PF13041.2|8.3e-14,PPR_2|PF13041.2|19,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.0002,PPR_2|PF13041.2|3e-12,PPR|PF01535.16|0.0071,PPR|PF01535.16|1.6,PPR|PF01535.16|0.25,PPR|PF01535.16|9.8e-05,PPR|PF01535.16|2.4e-08,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|16,PPR|PF01535.16|0.027,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.75,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.0049,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.0007,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.0041,PPR_3|PF13812.2|0.058,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|4.3e+03,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|9.4e+03,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|0.0014,ECSIT|PF06239.7|29,ECSIT|PF06239.7|1.7e+02,ECSIT|PF06239.7|6.3,ECSIT|PF06239.7|1.7e+02,ECSIT|PF06239.7|0.01,ECSIT|PF06239.7|1e+03,MRP-S27|PF10037.5|2.8e+02,MRP-S27|PF10037.5|0.0014,MRP-S27|PF10037.5|0.47,Clathrin|PF00637.16|60,Clathrin|PF00637.16|2,Clathrin|PF00637.16|8.5,Clathrin|PF00637.16|11,Clathrin|PF00637.16|1.8e+02 S_Transcript_192254:126-1094(-)
ATGGATGAACTTGGTGTTCATAAGAATCAAGAAACATTTGAGATTTTCTTGGATTATTGTGTGAGTGCTGGGAGGTTAAGTGATACCTGGCAGGTTATTGGTGAGATGAAGAAGAAAGGGTATCGGTCTAGTTCATTTGTTTTTAGTTGGATTATTGAACTCTATAGAGATAATGGTATGTGGAAGAAGGCAATGGAGATTATAGGGGATATAAGGGAGTCAGGGGTGCCTGTTGATAGACGGATTTATAATAGCATCGTTGATACGTTTGGTAAATATGGTGAGCTCGAACAAGCCTTGGAAGTTCTTGCCAAGATGCGGAAAGACGGTATAATGCCAGATATAATGACATGGAATTCTTTGATAAAATGGCACTGTAAGGCCGGAGATTATATGAAGGCACTTGATTTGTTCACTGAAATGCAAGATCAAGGATTGTATCCTGATCCGAAGATATTTGTTGTAATGATCAGTCGAATAGGAGAGCAAGGGAAGTGGGATCTGTTGAAAGAGAACTTTGAGAAACTGAAGCGTAGAGGCCATAAAAAGAGTGGAGCAATATATGCAGTTCTAGTTGATATATACGGTCAGTATGGGAGATATCAGGGTGCTGAAGATTGCATATCTGCTCTGAGAGCAGAAGATATTCAGCTGTCATCTAACATATTTTCTGTATTGGCGAATGCATATGCTCAACAGGGATTATGTGAAGAGACTGTTAAGGTACTCCAGATCATGGAAGCAGAAGGTATCGAACCAAACCTTATAATGCTCAATGTCTTGATCAATGCATTTGGCACCGCGGGGAGACATCTCGAAGCACTTTCTGTATTCAACCATATCATAGAAAGTGGCATTACTCCAGATGTTGTTACATACACCACTCTCATGAAAGCTTTTATCAGGGCAAAGAAATTCAGTCAGGTATGTGATGTTGCTCAATATTCACGCACTTGGGTTGAAAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_192254.p1 GENE.S_Transcript_192254~~S_Transcript_192254.p1 ORF type:complete len:353 (-),score=68.15,PPR_2|PF13041.2|2.5e-05,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|0.71,PPR_2|PF13041.2|1.5e-05,PPR_2|PF13041.2|8.3e-14,PPR_2|PF13041.2|19,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.0002,PPR_2|PF13041.2|3e-12,PPR|PF01535.16|0.0071,PPR|PF01535.16|1.6,PPR|PF01535.16|0.25,PPR|PF01535.16|9.8e-05,PPR|PF01535.16|2.4e-08,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|16,PPR|PF01535.16|0.027,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.75,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.0049,PPR_3|PF13812.2|7.6,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.0007,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|0.0041,PPR_3|PF13812.2|0.058,PPR_1|PF12854.3|3.3,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|4.3e+03,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|9.4e+03,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.00019,PPR_1|PF12854.3|0.0014,ECSIT|PF06239.7|29,ECSIT|PF06239.7|1.7e+02,ECSIT|PF06239.7|6.3,ECSIT|PF06239.7|1.7e+02,ECSIT|PF06239.7|0.01,ECSIT|PF06239.7|1e+03,MRP-S27|PF10037.5|2.8e+02,MRP-S27|PF10037.5|0.0014,MRP-S27|PF10037.5|0.47,Clathrin|PF00637.16|60,Clathrin|PF00637.16|2,Clathrin|PF00637.16|8.5,Clathrin|PF00637.16|11,Clathrin|PF00637.16|1.8e+02 S_Transcript_192254:126-1094(-)
MDELGVHKNQETFEIFLDYCVSAGRLSDTWQVIGEMKKKGYRSSSFVFSWIIELYRDNGMWKKAMEIIGDIRESGVPVDRRIYNSIVDTFGKYGELEQALEVLAKMRKDGIMPDIMTWNSLIKWHCKAGDYMKALDLFTEMQDQGLYPDPKIFVVMISRIGEQGKWDLLKENFEKLKRRGHKKSGAIYAVLVDIYGQYGRYQGAEDCISALRAEDIQLSSNIFSVLANAYAQQGLCEETVKVLQIMEAEGIEPNLIMLNVLINAFGTAGRHLEALSVFNHIIESGITPDVVTYTTLMKAFIRAKKFSQVCDVAQYSRTWVEK*

Click here to download the sequence:
Link to NCBI Protein BLAST