Transcript Information: S_Transcript_192470.p2


Annotated TAIR IDAT5G08720.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2841536-2845335 | Reverse length=719
E-Value5.2E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.201725022176
Replicate 212.681760926761
Replicate 310.310505999493
Condition 2: 8 Hour
Replicate 12.8545798062304
Replicate 22.2900317505232
Replicate 30.33568263944852
Condition 3: 24 Hour
Replicate 116.168653922172
Replicate 213.562595903956
Replicate 313.107519139667


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_192470.p2 GENE.S_Transcript_192470~~S_Transcript_192470.p2 ORF type:complete len:127 (-),score=17.31 S_Transcript_192470:918-1298(-)
ATGGATATTCCATCTAGTTGTTTCCCCTTAGTTTTCGATGAATCTAAGATCTGTTTATCTCAGATTACTCGTTTTCAGAAGAACTGGGGGATGGATCCTTCGTATATGCCCAGTAGAAAAGCCTTTGAACGTGCAGGACGTTATGACATTGCTCGTGCCCTGGAAAAATGGGGAGGCCTACATGAAGTTTCGCGTCTTTTGTCACTAAAACTGAGGCACCCAAACAGACAGGCAAGTCTATCTGGTGACAAGAAAAATGATTATGCTTCATCCCCGACTGCAGAGGCAGAAGACAAGGCACCCTCTAAACCTTATATCTCTCAAGATACTCAAAAGTGGCTTACAAAACTCAAGGATTTAGACATAACTTGGGTGGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_192470.p2 GENE.S_Transcript_192470~~S_Transcript_192470.p2 ORF type:complete len:127 (-),score=17.31 S_Transcript_192470:918-1298(-)
MDIPSSCFPLVFDESKICLSQITRFQKNWGMDPSYMPSRKAFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPNRQASLSGDKKNDYASSPTAEAEDKAPSKPYISQDTQKWLTKLKDLDITWVE*

Click here to download the sequence:
Link to NCBI Protein BLAST